Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2301 ATGTGCCCCTCCGGTCGCACCCTCCTCCATCCTCACGCCCTCTCCTCCTCCGATTTCCGACCGGCATTCGACGTCCTCGACGCCGACCACGACGGAAAAATCAGCCGCGACGACCTCCGCTCCTTCTATGCGGGCATGCACAGAGGCGGCGGAGGCGGAGGAGGAGACGACGTGATTGGGGCAATGATGACGGTGGCCGACACCAACAAGGACGGGTTCGTGGAGTACGAGGAGTTCGAGCGCGTGGTCGCAGGGAACGCGGAGAGAAAACACGTGGGGTGTGGGCCCATGGAAGACGTCTTCAGGGTCATGGACAAGGACGGCGACGGCAAGCTCAGCCACCGCGACTTGAAGACTTACATGGCCTCCGCTGGCTTTCCGGCCACCGACGATGACATCAACGCCATGATCCGTTTCGGCGGCGGCGACCTTAACGGTGGTGTTACGTTCGATGGTTTGCTTCGTATATTAGCGCTTGATTCTGCCGCTAGCTGCTAA 498 0.6104 MCPSGRTLLHPHALSSSDFRPAFDVLDADHDGKISRDDLRSFYAGMHRGGGGGGGDDVIGAMMTVADTNKDGFVEYEEFERVVAGNAERKHVGCGPMEDVFRVMDKDGDGKLSHRDLKTYMASAGFPATDDDINAMIRFGGGDLNGGVTFDGLLRILALDSAASC 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2301 165 CDD EFh 18 84 IPR002048 GO:0005509
Aed6g2301 165 Gene3D - 10 163 - -
Aed6g2301 165 ProSiteProfiles EF-hand calcium-binding domain profile. 97 127 IPR002048 GO:0005509
Aed6g2301 165 ProSitePatterns EF-hand calcium-binding domain. 27 39 IPR018247 -
Aed6g2301 165 ProSitePatterns EF-hand calcium-binding domain. 105 117 IPR018247 -
Aed6g2301 165 PANTHER CALMODULIN-RELATED PROTEIN 97A-LIKE 1 161 - -
Aed6g2301 165 SMART efh_1 58 86 IPR002048 GO:0005509
Aed6g2301 165 SMART efh_1 18 46 IPR002048 GO:0005509
Aed6g2301 165 SMART efh_1 96 124 IPR002048 GO:0005509
Aed6g2301 165 Pfam EF-hand domain pair 19 82 IPR002048 GO:0005509
Aed6g2301 165 ProSiteProfiles EF-hand calcium-binding domain profile. 14 49 IPR002048 GO:0005509
Aed6g2301 165 SUPERFAMILY EF-hand 18 157 IPR011992 -
Aed6g2301 165 Pfam EF hand 98 123 IPR002048 GO:0005509
Aed6g2301 165 PANTHER CALCIUM BINDING PROTEIN 1 161 - -
Aed6g2301 165 CDD EFh 98 158 IPR002048 GO:0005509
Aed6g2301 165 ProSitePatterns EF-hand calcium-binding domain. 67 79 IPR018247 -
Aed6g2301 165 ProSiteProfiles EF-hand calcium-binding domain profile. 54 89 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2301 Aed-Chr6 25039120 25039617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2301 1 157 EF-hand Containing Proteins AT5G49480 55.000 2.04e-56 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2301 K02183 - gmx:100527230 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2301 6 25039120 25039617 Aed6g2301 6 25039120 25039617 ECH