Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2276 ATGTTCTTCAGCGGCGATCCTTCTACGCGGAAGCGTGTCGATTTGGGAGGTCGCAGTTCAAAGGAAAGGGACCGGAAGAACCTTCTAGAACAGACTCGAGTTGAACGCAACCGCCGCTTATGGCTGCGCCAGCAGAACCATGCTGCACTCAAAATTCAGCTACAGAAATGCTTCAGAGGGAGAAAAGCTGTCAGAGCTGAACAATCTAAGTTGCGAGAGCAGTTCTATAAAATCTATGGGAAGTATTGCCAGAATGTGGACAGGAATTCTTTTGGTCCGGATTCTAATTTCCTCTGCCAATTCCTCTATTTCTTTAAGGCAGAAAATATGGATGATTTCTTAGTCCTTGTGCAAATATGCCGGTTGCTTTGGTGGTCTGTTCAGGATAATGGGGATGTTGTGAAACTTTTTGCGGGGTTGGATTACTCATCTACATGTGCTTTGGTGAACTACCGAGTGAAGCGATTTGTACAAGCTTGTATTTGTGCTCTGCATCAGAATAGAAATCAGTTAAAAGATCAGCTTTTATTGGCTCCTGAGGAATTGAATGTGTCAGCTATTCCTTTATTGGAAGTTTTAGTATTGTTAATTGATTCCAAATTGCCATGGAGCTGTAAGATAGTAGAATATCTCTTTCAAAACAATGCAGTTGGTCTACTCAGAGAGATCATTCTTACAGGAAAGGATAATGCAGAAAATTATTTTTCCATTGGCAAGGGATCATCATTGGAGCGTGTGCTTATTGCTCTAATATGCCATGTTGGTCAGAAGCCATGTATCTGTTCACATATTAATCCAAGATATAGCTTTGCATCACAGATCATCACAATTCCTTTCTTGTGGCATCTTTTCCCAAATTTACAACAGATTTTTGCAGCAGAGGACCTGAGCCAATGTTACATTCATCAAATGGCAAAGTTTGGGCAAAATCTGATCAATTTGCTACCTAAGGATATATCAAATGATTTTCCTAGCCATGCTTGTATGCTTGGAAATGTATTAGAAACTGCTGGAATGGCTTTGTCTCATCCTGACTGTTCATTTGATATGGCCATAGACCTTGCAGCTGTCACTACATTTTTGCTGGAGGCACTCCCATCAGTGAAAACTTCCAATAGTAGAGAAAATAGGAAATTAGAGCAGCAAATTTATAATGCCATAAATCCTCGCTTCCTTCTGCAACTGACAAATATACTATTTAAAGAGATTTCATCTGTCAATGGTTCAGATTATGGACCCAATGATAGAGATATTACAGCTGTTGATGGGGTTTGTGGGTTTTTGAATGTCACCTTCAACAAGCTGCCACTTGAACGGATTATGACTGTGCTTGCTTACAGAACTGAACTTGTTCCAACACTTTGGAATTTTATGAAGCGGTGTCATGAGAACCAAAAATGGTCATCACACTTCTCAAATGATGCACCTGGTTGTCTGTTACCTCTGGCTGTATTCTGTCCTGTCTACAAGCACATGCTTATGATTGTCGATAATGAAGAGTTTTATGAGCAGGAGAAACCGCTATCACTGAAGGACATTAGAAGCCTGATCATTATATTGAGACAGGTTCTGTGGCAGCTACTGTGGGTGAATCAAATCACATCTGCTAATTCAGTAAAATCTGTTCCAGTTAGTTCAGCTAGTAAGGGGCAGTCTGTTCAGACCATTCAACAGAGGGTTAGCATTGTAGTCTCTGAGCTTCTCTCCCAGCTGCAAGATTGGAACAATAGGCAACAGTTTACATCCCCCAGTAACTTCCATGCCGATGGGGTGAGTGACATATTTATCTCTCAGTCTCAACTAGCTGCTGTTAGGCAAAGGCATGGACCTCATGCTGTATTTTCTAGAAATCGGTTCAGAATAAAACGAGATCGTATTTTGGAAGATGCTTATAATCAAATGAGTCAGTTGACAGAAGATAGTCTTCGAGGATCGATTCGTGTGACTTTTGTCAATGAATTTGGAGTTGAAGAGGCTGGAATTGATGGTGGTGGAATATTTAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAATATGGATTATTTAAGGAAACAGCGGATCACCTGCTTTATCCTAATCCTGGATCTGGAATGATACATGCACAACATTTCCAATTTTTCCACTTCCTTGGTACTCTTCTTGCAAAGGCTATGTTTGAAGGGATTCTTGTTGATATACCATTTGCTACATTCTTCTTGAGCAAATTGAAACAAAAGCACAACTATTTGAATGACTTGCCTTCCTTGGACCCAGAATTATATCGTCATCTCATTTTTCTTAAGCATTATAGGGGTGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAATAATGAATATGGAGAACAAACGGAGGATGAACTGCTTCCTGGAGGAAGGAACCTACGTGTCACTAATGAAAATGTCATCACTTTTATTCATCTTGTAGCCAATCACCGCTTGAATTTTCAGATACGCCAACAAAGTTCACATTTCTTGAGGGGATTTCAGCAACTTATTCAGAAGGATTGGATTGACATGTTTAATGAACATGAACTTCAGCTTCTGATATCAGGTTCACTTGACAGCTTGGATATTGATGATCTGCGGCTGCATACCAACTATGCAGGAGGCTATAATAGTGAGCATTACGTTATGGAGATGTTTTGGGAAGTTCTCAAAGGCTTTTCATTGGAAAACAGGAAGAAATTTTTGAAGTTTGTGACAGGTTGCTCTCGTGGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCGTACAAAGGGCTTCTGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCAGCTACTTGTATGAATCTACTAAAGCTTCCACCTTATACAAGCAAGGAGCAATTGGAAACCAAATTATTGTATGCCATAAATGCCGATGCTGGCTTTGATTTAAGTTAA 2940 0.4017 MFFSGDPSTRKRVDLGGRSSKERDRKNLLEQTRVERNRRLWLRQQNHAALKIQLQKCFRGRKAVRAEQSKLREQFYKIYGKYCQNVDRNSFGPDSNFLCQFLYFFKAENMDDFLVLVQICRLLWWSVQDNGDVVKLFAGLDYSSTCALVNYRVKRFVQACICALHQNRNQLKDQLLLAPEELNVSAIPLLEVLVLLIDSKLPWSCKIVEYLFQNNAVGLLREIILTGKDNAENYFSIGKGSSLERVLIALICHVGQKPCICSHINPRYSFASQIITIPFLWHLFPNLQQIFAAEDLSQCYIHQMAKFGQNLINLLPKDISNDFPSHACMLGNVLETAGMALSHPDCSFDMAIDLAAVTTFLLEALPSVKTSNSRENRKLEQQIYNAINPRFLLQLTNILFKEISSVNGSDYGPNDRDITAVDGVCGFLNVTFNKLPLERIMTVLAYRTELVPTLWNFMKRCHENQKWSSHFSNDAPGCLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLSLKDIRSLIIILRQVLWQLLWVNQITSANSVKSVPVSSASKGQSVQTIQQRVSIVVSELLSQLQDWNNRQQFTSPSNFHADGVSDIFISQSQLAAVRQRHGPHAVFSRNRFRIKRDRILEDAYNQMSQLTEDSLRGSIRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHAQHFQFFHFLGTLLAKAMFEGILVDIPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHYRGDISELELYFVIVNNEYGEQTEDELLPGGRNLRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDIDDLRLHTNYAGGYNSEHYVMEMFWEVLKGFSLENRKKFLKFVTGCSRGPLLGFRYLEPMFCVQRASGNAAEESLDRLPTSATCMNLLKLPPYTSKEQLETKLLYAINADAGFDLS 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2276 979 Gene3D Hect, E3 ligase catalytic domains 619 857 - -
Aed6g2276 979 Gene3D Hect, E3 ligase catalytic domain 861 978 - -
Aed6g2276 979 SUPERFAMILY Hect, E3 ligase catalytic domain 608 971 IPR035983 GO:0004842
Aed6g2276 979 MobiDBLite consensus disorder prediction 1 28 - -
Aed6g2276 979 Gene3D Hect, E3 ligase catalytic domain 743 822 - -
Aed6g2276 979 PANTHER BNAC01G43970D PROTEIN 1 598 - -
Aed6g2276 979 PANTHER BNAC01G43970D PROTEIN 599 979 - -
Aed6g2276 979 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 598 IPR044611 GO:0000209|GO:0061630
Aed6g2276 979 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 599 979 IPR044611 GO:0000209|GO:0061630
Aed6g2276 979 ProSiteProfiles HECT domain profile. 638 979 IPR000569 GO:0004842
Aed6g2276 979 CDD HECTc 617 977 IPR000569 GO:0004842
Aed6g2276 979 Pfam HECT-domain (ubiquitin-transferase) 674 979 IPR000569 GO:0004842
Aed6g2276 979 MobiDBLite consensus disorder prediction 11 28 - -
Aed6g2276 979 SMART hect_3 636 979 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2276 Aed-Chr6 24847742 24862478 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2276 K10589 - gmx:100789933 1837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2276 6 24847742 24862478 Aed6g2276 6 24847742 24862478 ECH