Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2275 ATGGCGTCTCTGCCTCTGCAATTCAGCGGCCTCAAGTGCTCCTCTTCTTCTTCTCTCTTCTCCAAACCCTCCTCCCTTTGGACCCAAAAACAGCGCGTTTCAGTTACGATAGTGAACTCAATAGCAATAGCCAATGCACAGAACAAAGAGAGGGCTAGGCTTAAGAAACTCTTCGAAGACGCCTATGAGAGATGCCGCACTGCTCCCATGGAAGGTGTCTCCTTCACCCTCGAAGACTTCACTGCTGCTCTCGAAAAGTATGACTTCGATTCTGAAGTTGGCACCAAGATTAAAGGCACTGTGTTCTACACAGATGCCAATGGAGCCGTTGTTGATATAACTGCAAAGTCCTCAGCGTATTTGCCACTGCAAGAGGCGTGCATCCACAGGGTTAAGCATGTAGAAGAAGCGGGGTTAGTTCCAGGGTTCAAAGGCGAGTTTTTGATAATTGGTGAGAACTATGTAGATGACAGCTTGGTCTTGAGTTTAAGGTCTATTCAGTATGACCTTGCATGGGAACGTTGTAGACAGCTTCAAGCTGAAGATGTTACTGTCAAGGGTAAGGTGGGTAATGGGTTTCCTCCTACTATCAATCAAACTCTTATTCCTATTACCATGCACTTTGCAATAGATAAGATTGTTGGGGTGAACAAAGGTGGAGTGGTGGCTGAGGTGGAAGGCCTTAGAGGCTTTGTTCCATTGTCACAAATTTCAACGAACTCAAATGTAGAAGAGTTTCTTGACAAGGAGCTACCTCTTAAGTTTGTGGAGGTGGATGAGGAACAATCTAGACTTGTCCTCAGCAACCGAAAGGCCGTAGCTGGGAACCAGGCACAGCTAGGAATTGGATCAGTGGTCACTGGCTCTGTTCAAAGCCTGAAGCCATATGGTGCCTTCATTGACATTGGTGGAATTAATGGCCTCCTTCACGTTAGTCAGATCAGTCATGACCGTGTTACTGATATTTCAACTGTACTTCAACCTGGTGACGTATTAAAGGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTGAGTCTTTCCACTAAGAAGTTAGAGCCCACACCTGGTGACATGATCCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGGCAGAGAATAGCCCAAGCAGAAGCGATGGCTCGTGCAGACATGCTTAGGTTCCAGCCTGAGAGTGGATTAACAATCAGCAGTGATGGGATCCTGGGACCATTTTCTTCAGACTTGCCTGAAGAGGGACTGGATCTGAGCGAGATACCACCAGCAGAAGAATCATGA 1302 0.47 MASLPLQFSGLKCSSSSSLFSKPSSLWTQKQRVSVTIVNSIAIANAQNKERARLKKLFEDAYERCRTAPMEGVSFTLEDFTAALEKYDFDSEVGTKIKGTVFYTDANGAVVDITAKSSAYLPLQEACIHRVKHVEEAGLVPGFKGEFLIIGENYVDDSLVLSLRSIQYDLAWERCRQLQAEDVTVKGKVGNGFPPTINQTLIPITMHFAIDKIVGVNKGGVVAEVEGLRGFVPLSQISTNSNVEEFLDKELPLKFVEVDEEQSRLVLSNRKAVAGNQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVTDISTVLQPGDVLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTISSDGILGPFSSDLPEEGLDLSEIPPAEES 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2275 433 ProSiteProfiles S1 domain profile. 94 164 IPR003029 GO:0003676
Aed6g2275 433 PANTHER 30S RIBOSOMAL PROTEIN S1 1 189 - -
Aed6g2275 433 SUPERFAMILY Nucleic acid-binding proteins 212 273 IPR012340 -
Aed6g2275 433 SUPERFAMILY Nucleic acid-binding proteins 89 189 IPR012340 -
Aed6g2275 433 CDD S1_RPS1_repeat_hs4 283 351 - -
Aed6g2275 433 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 211 433 - -
Aed6g2275 433 Gene3D - 77 176 IPR012340 -
Aed6g2275 433 SMART S1_6 281 351 IPR022967 -
Aed6g2275 433 SMART S1_6 209 270 IPR022967 -
Aed6g2275 433 SMART S1_6 92 164 IPR022967 -
Aed6g2275 433 PANTHER 30S RIBOSOMAL PROTEIN S1 211 433 - -
Aed6g2275 433 ProSiteProfiles S1 domain profile. 187 270 IPR003029 GO:0003676
Aed6g2275 433 Pfam S1 RNA binding domain 212 268 IPR003029 GO:0003676
Aed6g2275 433 Pfam S1 RNA binding domain 282 351 IPR003029 GO:0003676
Aed6g2275 433 MobiDBLite consensus disorder prediction 407 433 - -
Aed6g2275 433 CDD S1_RPS1_repeat_ec2_hs2 212 270 - -
Aed6g2275 433 Gene3D - 278 355 IPR012340 -
Aed6g2275 433 Gene3D - 211 277 IPR012340 -
Aed6g2275 433 SUPERFAMILY Nucleic acid-binding proteins 282 361 IPR012340 -
Aed6g2275 433 ProSiteProfiles S1 domain profile. 283 351 IPR003029 GO:0003676
Aed6g2275 433 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 1 189 - -
Aed6g2275 433 Coils Coil 368 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2275 Aed-Chr6 24844782 24847533 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2275 K02945 - gmx:100812847 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2275 6 24844782 24847533 Aed6g2275 6 24844782 24847533 ECH