Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1871 ATGGATTCTTTTCATCCATTTAGATTGTGGGTCTTTGGTTTTCTGTGCTTAATGTTCCAATCTGGAAATGGGTTTTATCTCCCGGGTAGTTATCCTCACAAGCATGGCATTGGGGATGAGTTATCGGTGAAGGTAAATTCTCTTACTTCAATTGAGACAGAAATGCCCTTTAGTTATTATAGTTTACCCTTTTGCAAGCCTGAGGGTGGTGTCAAGGACAGTGCTGAGAATCTCGGTGAACTCCTCATGGGGGATCGGATTGAGAATTCGCCTTACAAGTTTAAGATGTACACCAATGAGTCTGAGATATTCTTGTGTCAAGTGGATAAGCTCTCTGGTGATCAGTTCAATATATTGAAGAAGAGGATTGATGATATGTATCAGGTTAATCTCATACTTGATAATTTGCCTGCCATTAGGTTTACCAAGAAGGAGGAGTACTATTTGAGGTGGACTGGGTATCCTGTTGGTATCAAGATTCAGGAGGTGTATTATCTGTTTAACCATTTGAGGTTTAATGTCCTTGTCCATAAGTATGAGGAGACCAATGTGGCGCGTGTTATGGGGACCGGTGATGCAGCTGAGATGATCCCAACAATTGCTAAGGAGGAGGGATCTGACAAGCCTGGTTACATGGTTGTTGGGTTTGAGGTGATACCTTGTAGTATTATGCATAATCCTGATTCGGCTAAAGGGTTGAAAATGTATAACAAGTACCCGTCACCAATCAAATGCAATCCGTCCATGGTGGCAATGCCTATCAAGGAAGGGCAGCCACTTGCATTTACTTATGAGGTCACCTTTGAGGAGAGTGATATCAAGTGGCCATCTAGATGGGATGCCTACCTGAAGATGGAGGGAGCCAAAGTTCACTGGTTTTCTATCCTCAATTCGCTTATGGTGATCACTTTTCTTGCTGGTATTGTTCTTGTTATCTTCCTGAGGACTGTTAGAAGGGATCTGACCCGGTATGAGGAGCTTGATAAGGAGGCCCAAGCACAGATGAACGAGGAGTTATCTGGTTGGAAGCTTGTTGTGGGGGATGTTTTCCGTGCCCCATCAAATCCTGCTTTGTTGTGTATAATGGTTGGTGATGGAGTTCAAATTCTGGGGATGGCTGTGGTGACAATTTTATTTGCTGCTCTTGGATTCATGTCACCGGCCTCGCGTGGAACACTTATCACAGGTATGCTGTTTTTCTACATGATACTTGGTGTTGCTGCTGGTTATGTTGCAGTTCGGCTATGGAGGACAATCGGTTGCGGCGATCAGAAGGGATGGATGTCCGTTGCATGGAAAGCTGCTTGTTTCTTCCCTGGCATCACCTTTTTGATCCTCACAACCTTGAACTTCCTATTGTGGGGAAGCCACAGCACTGGAGCCATTCCATTTTCACTCTTTGTTATACTGATTTTGCTTTGGTTCTGCATTTCTGTGCCCCTTACCCTCATTGGTGGGCTCTTTGGAGCAAGGGCACCTCACATTGAGTATCCAGTTCGAATGAATCAAATTCCTAGAGAAATTCCCCAGCAGAGGTACCCATCATGGCTTTTGGTTCTTGGTGCCGGCACCCTTCCATTCGGTACCTTGTTCATTGAACTCTTCTTTATCATGTCTAGTATTTGGATGGGCCGTGTTTACTATGTATTCGGATTTCTCTTGGTTGTTTTGATTCTTCTTGTGGTGGTCTGTGCTGAGGTATCTATAGTTCTAACGTACATGCACTTATGTGTGGAGGACTGGAGATGGTGGTGGAAATCATTCTTTGCCTCTGGTTCAGTTGCCATATACATCTTCATGTACTCCATAAATTATCTTGTATTTGATCTCAAGAATCTGAGTGGGCCTGTTTCTGCAACTCTCTACTTGGGATATTCCCTCTTCATGGTTCTAGCAATCATGTTTGCTACAGGAACAGTTGGTTTCCTTTCCTCATTCTGGTTTGTCTATTACTTGTTCTCTTCAGTCAAGTTTGATTGA 1980 0.4369 MDSFHPFRLWVFGFLCLMFQSGNGFYLPGSYPHKHGIGDELSVKVNSLTSIETEMPFSYYSLPFCKPEGGVKDSAENLGELLMGDRIENSPYKFKMYTNESEIFLCQVDKLSGDQFNILKKRIDDMYQVNLILDNLPAIRFTKKEEYYLRWTGYPVGIKIQEVYYLFNHLRFNVLVHKYEETNVARVMGTGDAAEMIPTIAKEEGSDKPGYMVVGFEVIPCSIMHNPDSAKGLKMYNKYPSPIKCNPSMVAMPIKEGQPLAFTYEVTFEESDIKWPSRWDAYLKMEGAKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPSNPALLCIMVGDGVQILGMAVVTILFAALGFMSPASRGTLITGMLFFYMILGVAAGYVAVRLWRTIGCGDQKGWMSVAWKAACFFPGITFLILTTLNFLLWGSHSTGAIPFSLFVILILLWFCISVPLTLIGGLFGARAPHIEYPVRMNQIPREIPQQRYPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVYYVFGFLLVVLILLVVVCAEVSIVLTYMHLCVEDWRWWWKSFFASGSVAIYIFMYSINYLVFDLKNLSGPVSATLYLGYSLFMVLAIMFATGTVGFLSSFWFVYYLFSSVKFD 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1871 659 Pfam Endomembrane protein 70 56 611 IPR004240 GO:0016021
Aed6g1871 659 PANTHER TRANSMEMBRANE 9 SUPERFAMILY PROTEIN 10 659 IPR004240 GO:0016021
Aed6g1871 659 PANTHER TRANSMEMBRANE 9 SUPERFAMILY MEMBER 10 659 - -
Aed6g1871 659 Coils Coil 314 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1871 Aed-Chr6 21895347 21900539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1871 1 659 Miscellaneous Gene Families AT5G35160 84.545 0.0 1134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1871 K17086 - gmx:100802084 1259.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1871 6 21895347 21900539 Aed6g1871 6 21895347 21900539 ECH
Aed6g1871 6 21895347 21900539 Aed4g1144 4 10921980 10924836 PCT