LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed6g1588	ATGTTCATGAGGAGGAAAATTTCAACCACAGTGAAGGCTGAATCTCGTGTTGACAAGTTTTCAAAAAGCGATATCATTGTTTCTCCATCCATTCTTTCTGCTAACTTTGCAAAATTGGGAGAGCAGGTGAAAGCAGTGGAGTTGGCTGGTTGTGATTGGATTCATGTTGATGTAATGGATGGTCGCTTTGTTCCAAATATTACAATTGGACCTCTTGTGGTTGATGCATTGCGCCCTGTGACAGATCTTCCTTTGGATGTACACCTGATGATTGTAGAGCCTGAACAAAGGGTTCCAGATTTTATCAAGGCAGGAGCCGATATAGTCAGTGTTCATGCTGAACAATCTTCCACCATCCATTTGCATCGTACAGTTAATCAAGTGAAAAGTCTGGGAGCTAAAGCTGGAGTTGTCTTGAACCCTGGTACTCCCTTAGGTGCAATAGAATATATCCTTGACGTGGTTGATTTGGTCTTAATTATGTCCGTAAACCCTGGCTTTGGTGGCCAGAGTTTTATTGAGAGTCAAGTAAAGAAGATTTCTGATTTGAGAAGATTGTGTGCAGAGAAGGGAGTGAATCCATGGATTGAAGTAGATGGTGGAGTTGGCCCTGGAAATGCTTACAAGGTGATTGAGGCTGGAGCCAATGCACTGGTTGCTGGTTCTGCTGTGTTTGGAGCTAAAGATTACGCTGAAGCTATAAGAGGAATCAAAACCAGCAAAAGACCTGAAGCAGTTGCTGTGTGA	747	0.4297	MFMRRKISTTVKAESRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHAEQSSTIHLHRTVNQVKSLGAKAGVVLNPGTPLGAIEYILDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKGVNPWIEVDGGVGPGNAYKVIEAGANALVAGSAVFGAKDYAEAIRGIKTSKRPEAVAV	248

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed6g1588	248	PIRSF	RPE	21	247	IPR026019	GO:0004750\|GO:0006098
	Aed6g1588	248	CDD	RPE	26	238	IPR000056	GO:0005975\|GO:0016857
	Aed6g1588	248	ProSitePatterns	Ribulose-phosphate 3-epimerase family signature 1.	54	68	IPR000056	GO:0005975\|GO:0016857
	Aed6g1588	248	ProSitePatterns	Ribulose-phosphate 3-epimerase family signature 2.	158	180	IPR000056	GO:0005975\|GO:0016857
	Aed6g1588	248	SUPERFAMILY	Ribulose-phoshate binding barrel	19	241	IPR011060	-
	Aed6g1588	248	Gene3D	Aldolase class I	15	244	IPR013785	-
	Aed6g1588	248	Hamap	Ribulose-phosphate 3-epimerase [rpe].	24	240	IPR026019	GO:0004750\|GO:0006098
	Aed6g1588	248	TIGRFAM	rpe: ribulose-phosphate 3-epimerase	27	238	IPR026019	GO:0004750\|GO:0006098
	Aed6g1588	248	PANTHER	RIBULOSE-5-PHOSPHATE-3-EPIMERASE	2	236	IPR000056	GO:0005975\|GO:0016857
	Aed6g1588	248	Pfam	Ribulose-phosphate 3 epimerase family	27	225	IPR000056	GO:0005975\|GO:0016857
	Aed6g1588	248	PANTHER	-	2	236	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed6g1588	Aed-Chr6	19885208	19888765	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed6g1588	K01783		-	gmx:100817791	469.544

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed6g1588	6	19885208	19888765	Aed6g1588	6	19885208	19888765	ECH