Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1572 ATGGAAGAAGCATGTGCATGGGTTTCACTGGTGAGCAAGTGCAGCAGCCTGAAACCCACGAAGCAAATCCACGCCCAAATCTGCAAAACCGGTTTTCACAGAGACCCTTTTGTATTCGGCAAGCTCCTTCTCCACTGCGCCATCACCATCTCCGACGCTCTCCACTACTCTCTCCGTCTCTTCCACCACTTCCCGAACCCCGACACCTTCATGCACAACACCCTCATTCGCGCACTCTCTCTCTCCCAAACCCCTCTTTCCTCCCTCCACCCCTTCATCCAACTCCGCCGCCAACCCACCCTCTCCCCCGACAGTTTCACCTTCGCCTTCGCTCTCAAAGCGGTCGCCAACTCCCGCCACCTTAGACCCGGCATTCAGCTGCACTCCCAAGCCTTCCGCCATGGCTTCGACGCCCACATCTTTGTTGGGACAACGTTGATCAGCATGTACGCTGAATGCGGTGGCTCCGGCTCTGCTCGAAGGGTGTTCGATGAAATGTCTTCACCAAACGTGGTCACATGGAATGCTGCTGTTACGGCGGCTTTCAGGTGTGGCGACGTGGAAGGCGCGCTGGACGTGTTTGGGCGCATGCCGGTTCGGAACTTGACCTCCTGGAATGCCATGCTTGCTGGTTATGCCAAGGCAGGTGAGCTTGGGTTGGCAAGGAGAGTTTTTTCTGAAATGCCTCTGAGGGATGAGGTTTCTTGGAGCACTATGATTGTTGGGTTTGCTCATAATGGTTGTTTTGACGAAGCTTTTGGGTTTTTCAGGGAGTTGCTGCGTGATGGAATTCGGACAAATGAGGTGAGTCTCACTGGGGTGCTGTCTGCTTGTGCACAAGCTGGGGCGTTTGAGTTTGGGAAGATTTTACATGGGTTTGTGGAGAAAATTGGGTTTCTTTTTGTTGGTTCAGTGAATAATGCTCTCATAGATACCTACTCCAAGTGTGGGAATGTGGCTATGGCTAGGTTGGTCTTTCAGAATATGCCGGTGGCTAGGAGCATTGTGTCTTGGACATCGATAATAGCAGGACTTGCGATGCATGGTTGTGGAGCAGAAGCAATACAGCTTTTTCGTGAGATGGAAGAGTCTGGAGTTAGGCCAGATGGTATTACTTTTATATCGCTACTGTATGCTTGTAGCCATAGTGGCTTGGTTGAGGAAGGGTGTAGTTTATTTTCTAAGATGAAGAATTTGTATGGCATTGAACCTGCCATTGAGCATTATGGGTGCATGGTTGATCTGTATGGTCGAGCCGCTAGGTTGCAGAAGGCCTATGAATTTATATGTGAAATGCCAGTTTCACCCAATGCAATCATTTGGAGGACGCTCCTTGGGGCTTGCAGCATTCATGGTAATATTGAATTGGCAGAGCTTGTGAAAGCAAGGCTTGCTGAAATGGATCCAGACAACTCTGGTGACCATGTACTGCTGTCAAATGTTTATGCCGTTGCAGGGAAATGGAATGATGTTGCCAGCATAAGAAGAACGATGATTGAACATAGCATGAAAAAAACTCCTGGTTGGAGCATGATTGAAATTGACAATGTCATTTATGGTTTTGTGGCTGGTGAAAAGCCTAATGAGGTTACGGATGTGGCACATGAAAAACTGAGGGAAATAATGTTGAGACTCAGAGCAGAAGCAAGTTATGCGCCACAGCTAAGGAGTGTTCTGCATGATATTGAAGAGGAAGAGAAAGAAGATTCAGTTTCTAAGCACAGCGAGAAGCTTGCTGCTGCTTTTGGAATAGCCAAACTTCCCAAGGGAAGGATTTTAAGAATTGTGAAGAACCTGAGGGTTTGTGGGGACTGCCATACTGTGATGAAGCTGATTTCTAAAAGATTACTGGTGACAGAGTTATCGGTCTCATCTCTAATGGTTGCTCTCATCTGCACCAAAGCTTCCAGCTAG 1914 0.4838 MEEACAWVSLVSKCSSLKPTKQIHAQICKTGFHRDPFVFGKLLLHCAITISDALHYSLRLFHHFPNPDTFMHNTLIRALSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGGSGSARRVFDEMSSPNVVTWNAAVTAAFRCGDVEGALDVFGRMPVRNLTSWNAMLAGYAKAGELGLARRVFSEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLRDGIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKIGFLFVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGAEAIQLFREMEESGVRPDGITFISLLYACSHSGLVEEGCSLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIELAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWNDVASIRRTMIEHSMKKTPGWSMIEIDNVIYGFVAGEKPNEVTDVAHEKLREIMLRLRAEASYAPQLRSVLHDIEEEEKEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKRLLVTELSVSSLMVALICTKASS 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1572 637 Pfam DYW family of nucleic acid deaminases 551 614 IPR032867 GO:0008270
Aed6g1572 637 PANTHER - 11 581 - -
Aed6g1572 637 Pfam E motif 451 513 IPR046848 -
Aed6g1572 637 Pfam PPR repeat family 334 381 IPR002885 -
Aed6g1572 637 Pfam PPR repeat family 232 279 IPR002885 -
Aed6g1572 637 Gene3D Tetratricopeptide repeat domain 87 201 IPR011990 GO:0005515
Aed6g1572 637 Gene3D Tetratricopeptide repeat domain 303 610 IPR011990 GO:0005515
Aed6g1572 637 Gene3D Tetratricopeptide repeat domain 202 297 IPR011990 GO:0005515
Aed6g1572 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Aed6g1572 637 TIGRFAM PPR: pentatricopeptide repeat domain 371 404 IPR002885 -
Aed6g1572 637 TIGRFAM PPR: pentatricopeptide repeat domain 336 369 IPR002885 -
Aed6g1572 637 TIGRFAM PPR: pentatricopeptide repeat domain 204 229 IPR002885 -
Aed6g1572 637 TIGRFAM PPR: pentatricopeptide repeat domain 234 267 IPR002885 -
Aed6g1572 637 TIGRFAM PPR: pentatricopeptide repeat domain 172 201 IPR002885 -
Aed6g1572 637 Pfam PPR repeat 408 433 IPR002885 -
Aed6g1572 637 Pfam PPR repeat 144 167 IPR002885 -
Aed6g1572 637 Pfam PPR repeat 172 201 IPR002885 -
Aed6g1572 637 Pfam PPR repeat 204 229 IPR002885 -
Aed6g1572 637 Pfam PPR repeat 307 329 IPR002885 -
Aed6g1572 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 231 IPR002885 -
Aed6g1572 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 200 IPR002885 -
Aed6g1572 637 PANTHER OS01G0913400 PROTEIN-RELATED 11 581 - -
Aed6g1572 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1572 Aed-Chr6 19773813 19776251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1572 104 613 Glycoside Hydrolase AT3G49170 34.409 1.01e-102 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1572 - - gmx:106796767 1164.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1572 6 19773813 19776251 Aed6g1572 6 19773813 19776251 ECH