Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1515 ATGGGAGACAGGCTCAAGCGAAGTGAGGCCTATGCAGCTGTGGAGGCATATCTCAGTGCCAACACATCAAAGAGTGCCAAAAGACTCAAAGCTGAAATGGGAAAAGACAGCACCAACTTGGTTCTAACCATGGATGAGTACGAGAGAGTAACGGATGATTACGAAGGTGTTAAGGTTTGGTGGGTCTCCAGCAAAGTGATGTCACCAACAAGGTCTCCAATGTCTTATTATCCAGAACAAGAGAAAAGATTCTACAAGCTGAGTTTTCACATGAAGAATAGGGACTTAGTAACTGAGTCCTATTTGAAGCATGTGATGAGGGAAGGGAAAGAGATTCGCTTGAGGAATAGGCAGAGGAAGTTGTATACTAATAGCCCTGGCTACAAGTGGCCGAGTTACAAGCAAACGATGTGGAGCCACATTGTGTTTGAGCACCCTGCAACTTTTGACACAATGGCGATGGAGACTGAGAAGAAAAAAGAGATCATTGAGGATTTGGTGACTTTCAGCAAGAGCAAGGATTTCTATGGAAGGATTGGGAAGGCGTGGAAGAGAGGGTATCTTCTTTATGGTCCTCCCGGGACAGGAAAATCCACCATGATTGCTGCAATGGCGAATTTGTTGGGCTATGATGTCTATGACTTGGAGCTCACTGCAGTGAAGGACAACACCGAGCTGAGGAAGCTTCTGATTGAGACAACAAGTAAGTCTATGATTGTGATTGAGGACATTGATTGCTCTCTTGATCTTACAGGGCAGAGGAAGAAGAATAAGTTGTCATCGACGACGGAGGAGGACGAGGCCGATAAGGAAGCTGTTGTTGGAAGAAAAGAGGCTAAGGAGGAAGGAGGAGGAGGAGGAGGGTGTGGTGGAAGTAGCAAAGTGACACTCTCAGGGCTGTTGAATTTCATTGATGGGATTTGGTCTGCATGTGGAGGGGAGAGGTTGATTGTGTTCACGACAAACTATGTGGAGAAGCTTGATCCTGCTTTGATTAGAAGGGGGAGAATGGACAAGCATATTCAGCTGTCTTATTGCACTTTTGATGGCTTCAAAGTGCTTGCTAATAACTACTTGAAGCTTGAGACTCATCCATTGTTTGACACTATTGAGAGGCTTATTGGGGAGGTGAAGATCACCCCAGCTGATGTTGCTGAAAACCTTATGCCTAAGTCACCATTGGATGATCCTCACAAGTGTCTCTCAAACTTGATTGAAGCACTTGAGGAGCTGAAGCAGAGTAATAGTTGTAGTCACATTAAGGAGGAACATGAGGAGGTTCTTCAACAAAATGGGTCCATTAAGGAAAATGGTGACAAGGCAATGAATCAATGCCAGATATGGCTTGTGAATGATACATAA 1362 0.4479 MGDRLKRSEAYAAVEAYLSANTSKSAKRLKAEMGKDSTNLVLTMDEYERVTDDYEGVKVWWVSSKVMSPTRSPMSYYPEQEKRFYKLSFHMKNRDLVTESYLKHVMREGKEIRLRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFDTMAMETEKKKEIIEDLVTFSKSKDFYGRIGKAWKRGYLLYGPPGTGKSTMIAAMANLLGYDVYDLELTAVKDNTELRKLLIETTSKSMIVIEDIDCSLDLTGQRKKNKLSSTTEEDEADKEAVVGRKEAKEEGGGGGGCGGSSKVTLSGLLNFIDGIWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIQLSYCTFDGFKVLANNYLKLETHPLFDTIERLIGEVKITPADVAENLMPKSPLDDPHKCLSNLIEALEELKQSNSCSHIKEEHEEVLQQNGSIKENGDKAMNQCQIWLVNDT 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1515 453 ProSitePatterns AAA-protein family signature. 315 334 IPR003960 GO:0005524|GO:0016887
Aed6g1515 453 Gene3D - 341 408 - -
Aed6g1515 453 SMART AAA_5 183 347 IPR003593 -
Aed6g1515 453 Pfam ATPase family associated with various cellular activities (AAA) 188 344 IPR003959 GO:0005524|GO:0016887
Aed6g1515 453 MobiDBLite consensus disorder prediction 256 283 - -
Aed6g1515 453 PANTHER ATP BINDING PROTEIN 2 440 - -
Aed6g1515 453 CDD AAA 184 345 - -
Aed6g1515 453 Pfam Domain associated at C-terminal with AAA 4 63 IPR025753 -
Aed6g1515 453 Gene3D - 143 340 IPR027417 -
Aed6g1515 453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 413 IPR027417 -
Aed6g1515 453 MobiDBLite consensus disorder prediction 256 289 - -
Aed6g1515 453 PANTHER BCS1 AAA-TYPE ATPASE 2 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1515 Aed-Chr6 19372278 19373639 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1515 160 360 Miscellaneous Gene Families AT5G53170 26.368 7.02e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1515 - - gmx:100798981 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1515 6 19372278 19373639 Aed6g1515 6 19372278 19373639 ECH