Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1479 ATCCGAACTAGTCCAAATATTTTTTCTGGACTCGGACCGAACCGGTGTCCAATCCTAGAAAAGTGTGTGGGATTTGGGGTTTGTTTGTTTGTTTTCCAACAAAATTTAACACCAGTGACCAGACCCTTTTCTGTTTCTACCAACAGAGTCAGAGTCAGAGTCACTAACTCACTCTCACTCACTCTAATAGATAGTAGAGAGAGCATCATATTCATAATCATATTGATGGGGTTGATGACAATGAAACCTCCTTCTCACACGGTTCGCGTGAACAACATACCCCAATCCGCGACCGCGAAGGACCTCCTCAGCTTCCTCGAATCAACGGTGGGTCCCTCGACGGTGTTCGCCCTCGAAATCTTCTCCGACAACCCCAACTGGAAGTCGCGTGGCGTCGGGCGCGTGCAGTTCGAGACCCTCGACGCCCGGTCACGCGCCCTCTCGCTCTGCCAGCTCGACAAGCTCCTCTTCCGCTCGCGGTTCCTCCGCCTCTCCGAAACCGACGACGACATCGTCTTCCGCCCTCAGCACCGCCTCCTGAACGGCGTCCTCTACGCCGGCTTCATGCTCTCCGACCACCGCATGAGCGTCCTCGAGTCATGGGAGGGCGTCGCCGGCTGGGCCATGCCTCAAAGGAACAAGCTTGACTTCTGGGTGTGGCATAACGGAGACTGTTACAGACTCGAGATTTTCTTTGAGGATATTTTGGAGTCTCATGGATATTGTTTGGGAGGAGATGCCAGACTCAATGCCCTTCTCTTGAAGCTGAAATTTGGGCCAAAGATTTATAAGAAAAAGGTGGGGCCAGATGTGGCAGCCAAGTTTAGGGGTGATAGATACCGTTTTTGTAAGGAGGATTTTGAGTTTCTTTGGGTGCGGACTACTGACTTCTCGCCTCTCAAGTCAATTGGGCACTCTACTTCATTTTGTTGGGAAATTGTGGAAGAACATTTAGCTTCAGATGTTTTTACAAGTTTCCCACTCTACAAGGAAAATTTGAGAGATCTGGCTCTGGAAGACGGGGAAGAATTCTGTTGTTCCACGGAAGCAGTTCCGCTTGTTAAGTGTGCTTTGCAATCCAAGTTACCTTATGAGGCTCTTTTCCAGCTGAATTCTCTAGTTCATACCCAGAAAATTAGTCTTGCTTCGGCAGATGCTGAATTGATTGACTTGTTAGCAGGCTTAGATGAAGAAACTAGAGCTGTGATTTTTCAGAAATTGCACAACATGAGCTTCACTTGTTATGAGCCTCTCAAATTCGTCAAGACTCAATTGCATGTGCTGAGTAACAAGAAAAGAAGTCTGCCACAATCGTCACAGGCAAGGTTGACAGATGATAACATTATGAGCTGTCATAGAGCCTTGATTACCCCGACAAAGATTTTTTGCCTTGGTCCCGAGCTTGAAACCTCAAATCATGTGGTAAAGCACTTTGCTTCACATGCATCAGATTTCATGAGGATTACCTTTGTTGAAGAGAATTGGAATAAGCTTCCAACTATTGCAGTATCAACTGGTGTGCAAAAGGGACTCTTTTCAAAGCCTTTAAAAACTGAAATATATAAGCGGGTATTGACTATCCTTCGAGATGGGATTGTAATTGGCTCAAAGAGATTTGAGTTCCTGGCCTTCTCTGCTAGTCAGCTGCGATCAAATTCTGTTTGGTTATTTGCTTCTAATGACAATCTGAAAGCAGCAGATATCAGAGAATGGATGGGATGCTTCAACAATATTCGCAGTGTTTCTAAATGTGCAGCGAGGATGGGTCAGTTGTTTAGTTCTTCCATGCAAACTTTTGAAGTGACCCCTCAAGAAGTGGAGGTAATTCCAGATATTGAAGTTACTTCTGATGGTGTAAGCTACTGTTTCTCAGATGGTATTGGAAAAATTTCCCAATCTTTTGCTAAGAAAGTTGCTCAAAGGCTAAAATTGGATCACAGTCCATCGGCATTTCAAATTCGGTATGGAGGATATAAAGGTGTCATTGCTGTTGATCGCCATTCCTTTAGGAAGTTATCATTGCGTAGTAGCATGCTTAAATTTGAATCAGAAAACATGATGCTTTGTGTCACTAAATGGAGTGAGTCAATGCCTTGCTTTCTCAATCGAGAGATTATATCCCTGTTGTCTACATTAGGAGTAAAAGATGAAGTGTTTTTGGCAATGCAACAGGACCAATTGAATTTGTTAGGAAGGATGTTGACTGATAGTAAAGCAGCTTTGGATGTTTTGGAAAGTTTAAATGGAGCTGATTCAAGGAGCATTCTAGTGAAGATGTTGCATGAATTTAATGAGCCAAACAGTGAGCCTTACTTATCAATGATGCTTAAGGCTTATTATGCATACCAATTATCTGACTTGAAAAGTAGATGCCGAATATTTGTTCCCAAGGGTCGGGTCTTAGTAGGTTGCTTGGATGAAACTGAGCTTTTGAATTATGGCCAAGTATTTGTCCGCATAACCATGACAAAAACTATGGAAAAAATTGGAGATGAAAACCTAAGGAAAGTGGATGGGGATGATAGCACACGTATAATAGTGGGAAAGGTAGTGGTCACCAAAAATCCTTGTCTTCACCCAGGAGATGTCAGAGTCCTTGATGCTATCTACATTGAAGAATTGGAAGAAAAGGGTTTGACGGATTGCCTTGTATTTCCACAAAAAGGACATAGGCCTCATCCAAATGAATGCTCTGGAGGTGATCTTGATGGAGATTTGTTTTTCATAAGTTGGGACAAAGATCTAACCCCATGTCAAACTGAGGCTCCAATGGACTACACAGGAAGAAGGCCTCGTATAATGGACCATAAGGTGACCCTAGAGGAAATCCAACAATTCTTTGTTGATTACATGATCAATGATACTTTGGGCGCTATCTCTACCGCACATCTAGTTCACGCTGACCGTGAACAAGACAAGGCCAAGAGTAGAAAATGTCTGGAATTGGCAGAGCTACATTCCATGGCTGTTGACTTTGCGAAGACTGGAGCACCTGCTGCAATGCCTAGAGTTCTGAAGCCAAGAGAGTTTCCAGATTTCATGGAGAGGGTTGGCAAGCCTATGTACATCTCCAAGGGGGTACTGGGAAAACTTTATCGTGCCATAATTGAGTCACAACTGCAAATAAGGTATAGTTTTGTGTGGTCAGAGAAGCATGCTGAAGAAGCATATGATAGTAGCCTTGAAGTGAGTGGCTTTGAGGTCTTCCTTGAGACAGCCTCAAGTCACAAAGAAATGTATGGGCAGAAGATGAGCAGTTTGATGAACTTCTACGGTGCAGAGACCGAGGATGAAATGATACTCGGTAACTTGCAAAACCGTGCTTCATATTTGCAGCGCGATAACAGGAAATATGGTGACATGAAGGATCGGATTCTGCTCTCGGTGAAGAATCTTCAGTGCGAAGCTAAGGAATGGTTTGAAACTAGTTGCCAGCCGTGTGAACATAAGCCTATGGCATCTGCATGGTATCATGTGACCTATCACCCCAGCTACTATTGCCGGGAAAGTCCATGTTTTCTAAGCTTTCCATGGATAGTTGGTGACATTTTATTGCAAGTAAAGTCTGTAAACAAAGGAGTTCACAAATGA 3591 0.4386 IRTSPNIFSGLGPNRCPILEKCVGFGVCLFVFQQNLTPVTRPFSVSTNRVRVRVTNSLSLTLIDSRESIIFIIILMGLMTMKPPSHTVRVNNIPQSATAKDLLSFLESTVGPSTVFALEIFSDNPNWKSRGVGRVQFETLDARSRALSLCQLDKLLFRSRFLRLSETDDDIVFRPQHRLLNGVLYAGFMLSDHRMSVLESWEGVAGWAMPQRNKLDFWVWHNGDCYRLEIFFEDILESHGYCLGGDARLNALLLKLKFGPKIYKKKVGPDVAAKFRGDRYRFCKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIVEEHLASDVFTSFPLYKENLRDLALEDGEEFCCSTEAVPLVKCALQSKLPYEALFQLNSLVHTQKISLASADAELIDLLAGLDEETRAVIFQKLHNMSFTCYEPLKFVKTQLHVLSNKKRSLPQSSQARLTDDNIMSCHRALITPTKIFCLGPELETSNHVVKHFASHASDFMRITFVEENWNKLPTIAVSTGVQKGLFSKPLKTEIYKRVLTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNLKAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVTPQEVEVIPDIEVTSDGVSYCFSDGIGKISQSFAKKVAQRLKLDHSPSAFQIRYGGYKGVIAVDRHSFRKLSLRSSMLKFESENMMLCVTKWSESMPCFLNREIISLLSTLGVKDEVFLAMQQDQLNLLGRMLTDSKAALDVLESLNGADSRSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCRIFVPKGRVLVGCLDETELLNYGQVFVRITMTKTMEKIGDENLRKVDGDDSTRIIVGKVVVTKNPCLHPGDVRVLDAIYIEELEEKGLTDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLTPCQTEAPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADREQDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVGKPMYISKGVLGKLYRAIIESQLQIRYSFVWSEKHAEEAYDSSLEVSGFEVFLETASSHKEMYGQKMSSLMNFYGAETEDEMILGNLQNRASYLQRDNRKYGDMKDRILLSVKNLQCEAKEWFETSCQPCEHKPMASAWYHVTYHPSYYCRESPCFLSFPWIVGDILLQVKSVNKGVHK 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1479 1196 SUPERFAMILY RNA-binding domain, RBD 80 176 IPR035979 GO:0003676
Aed6g1479 1196 CDD RRM_SF 88 165 - -
Aed6g1479 1196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 169 IPR000504 GO:0003723
Aed6g1479 1196 PANTHER RNA-DEPENDENT RNA POLYMERASE 82 1192 IPR007855 GO:0003968
Aed6g1479 1196 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 82 1192 - -
Aed6g1479 1196 Pfam RNA dependent RNA polymerase 456 1035 IPR007855 GO:0003968
Aed6g1479 1196 Gene3D - 79 173 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1479 Aed-Chr6 19103567 19109406 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1479 K11699 - gmx:100808274 2075.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1479 6 19103567 19109406 Aed6g1479 6 19103567 19109406 ECH