Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1406 ATGAACCGCGTTAAGGCTATTGCTGTTGCGGCTTCTCTCAGAACGCTCGAGTCGTCGTCACACGCTACCCGAGTTCTGGTAACTCGGAACCAGGTGACTCACTTCTCTCTCCATAATCCACTACCCCTTTTTGATAGGTCTCATTATTTACGTTTTCCCATCAGTCACCACAAACTCTATTTTTCTACGAAACCGAACTCCATTGTGGAGCTCGTTTTCACCAACGATTGGTCCCAAGCGTTAGAGCTCAAGTTAGAAAATCGTTGCCCATCTATTCCCCATGAAACCGTTCTTTACGTTATCAAGCGCTTGGATAAAACCCCAGAAAAAGCTTCGTGCTTTTTCAATTGGGTCAGTAAGAAAGACTGGTTTAAGCCAAGTTCTTCGGTGTATAGCTTAGTTGTTAGAATCTTAGCGACCAAGGATACTATGAAGCAATTTTGGGTTACTCTAAGGACGATGAAGGAAAATGGGTTTTATCTTGACGAAGAAACATATATGACAATTTATGTTGGCTTTAAGAGGGAAAAGATGGACAGTGACTCTGTTGCTTTGTCCCACTTCTATAGTCGGATGCTGGAGGAGAATGCAATGCAAAGTGTTGTCTCCAACGTGGTTGGTATCATTTCACTGTCTGAATGGGGTGATGAGGTTATGGGTAAACTTGCAAAGCTTGAAATTCAGCTTTCGGATAATTTTGTAATAAGGGTTTTGAAAGAGCTTCGAAAAACTCCTTTAAAGGCTTACAAGTTCTTTCATTGGGTTGGGAAGCAATCTGACTATGAGCATAATACTGTGACTTACAATGCAGTTGCAAGAGTTCTCGCGAGGGATGACTCAATTGAGGAGTTTTGGAGTGTTATTGAGGAGATGAAGAGAGTGGGCCATGAATTGGATATTGATACTTACATAAAGATATCAAGGCAGCTTCAAAGGTATAGGATGATGGAGGATGCTGTCAAGCTTTATGAGCTTATGATGGATGGTTCATATAAGCCATTGGTTCAGGATTGCAATATGCTTTTAAAGAGTATCTCTGCAAGTGATAAGCCAAAGCTGGATTTGGTTTTCAGGGTTGCTAAGAAGTACGAGTCGGCAGGGCACACTCTCTCCAAGGCTATCTATGATGGAATTCACAGGTCTTTGACTAGTGCTGGGAAATTTGATGAAGCTGAAGATATTGTTAGGACTATGAGAAATGCCGGCTATGAGCCTGATAACATCACTTACAGTCAAATGGTTTTTGGACTTTGTAAGATGAGGAGGTTTGAAGAAGCATGTAAAGTGCTGGAGGATATGGAATCTAGTGGATGCATCCCTGATATAAAGACTTGGACCATCTTGATCCAAGGGCATTGTGATGCCAATGAAGTAGATAAAGCATTACTTTGTTTTGCCAAGATGATTGAAAAGGGCTGCGATCCAGATGCTGATTTGTTGGATGTTCTGGTTGACGGTTTTCTTAGTCAAAAGAGAATAGAAGCTGCATACAAGTTGGTTATAGAGATAAGTAAGAAGTGTCGTATATCTCCATGGCAAGCTACATATAAGAAACTGATTGAAAAGCTATTAGAAGTCATGAAGTTTGAGGAAGCACTTGAACTACTTCGTTTGATGAAGAACCACAACTACCCTCCATACCATCTACCCTTTGTGCCTTATATTTCAAAGTTTGGGTCTGTGGAGGATGCTGGGGCATTCCTTAAGGCATTGAGTGTAAAAAGTTACCCATCCCATACCGTTTACGTTCAGGTTTTTGAATCCTTATTCCGAGAAGGTAGACTCTCTGAGGCGAAAGATCTATTGTACAAGACTCCTCACCATATCCGTACGCATAGTAAAATCTGCAAACTATTTGGTTCGTCTGAGAGTGACACTCAGATGACCACTCAGACTCAGCTGCTGCCTGATCCCTAG 1917 0.4163 MNRVKAIAVAASLRTLESSSHATRVLVTRNQVTHFSLHNPLPLFDRSHYLRFPISHHKLYFSTKPNSIVELVFTNDWSQALELKLENRCPSIPHETVLYVIKRLDKTPEKASCFFNWVSKKDWFKPSSSVYSLVVRILATKDTMKQFWVTLRTMKENGFYLDEETYMTIYVGFKREKMDSDSVALSHFYSRMLEENAMQSVVSNVVGIISLSEWGDEVMGKLAKLEIQLSDNFVIRVLKELRKTPLKAYKFFHWVGKQSDYEHNTVTYNAVARVLARDDSIEEFWSVIEEMKRVGHELDIDTYIKISRQLQRYRMMEDAVKLYELMMDGSYKPLVQDCNMLLKSISASDKPKLDLVFRVAKKYESAGHTLSKAIYDGIHRSLTSAGKFDEAEDIVRTMRNAGYEPDNITYSQMVFGLCKMRRFEEACKVLEDMESSGCIPDIKTWTILIQGHCDANEVDKALLCFAKMIEKGCDPDADLLDVLVDGFLSQKRIEAAYKLVIEISKKCRISPWQATYKKLIEKLLEVMKFEEALELLRLMKNHNYPPYHLPFVPYISKFGSVEDAGAFLKALSVKSYPSHTVYVQVFESLFREGRLSEAKDLLYKTPHHIRTHSKICKLFGSSESDTQMTTQTQLLPDP 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1406 638 Gene3D Tetratricopeptide repeat domain 494 634 IPR011990 GO:0005515
Aed6g1406 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Aed6g1406 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
Aed6g1406 638 Pfam PPR repeat 266 295 IPR002885 -
Aed6g1406 638 Pfam PPR repeat 515 543 IPR002885 -
Aed6g1406 638 Gene3D Tetratricopeptide repeat domain 71 214 IPR011990 GO:0005515
Aed6g1406 638 Gene3D Tetratricopeptide repeat domain 216 354 IPR011990 GO:0005515
Aed6g1406 638 Gene3D Tetratricopeptide repeat domain 357 493 IPR011990 GO:0005515
Aed6g1406 638 Pfam Pentacotripeptide-repeat region of PRORP 317 489 IPR033443 -
Aed6g1406 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Aed6g1406 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Aed6g1406 638 PANTHER OS01G0970900 PROTEIN 1 622 IPR044578 GO:0008380
Aed6g1406 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 512 546 IPR002885 -
Aed6g1406 638 TIGRFAM PPR: pentatricopeptide repeat domain 408 442 IPR002885 -
Aed6g1406 638 TIGRFAM PPR: pentatricopeptide repeat domain 444 477 IPR002885 -
Aed6g1406 638 TIGRFAM PPR: pentatricopeptide repeat domain 266 299 IPR002885 -
Aed6g1406 638 TIGRFAM PPR: pentatricopeptide repeat domain 380 406 IPR002885 -
Aed6g1406 638 PANTHER OS01G0970900 PROTEIN 1 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1406 Aed-Chr6 18549572 18551488 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1406 266 631 Miscellaneous Gene Families AT4G11690 23.181 3.12e-21 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1406 - - gmx:100815857 1135.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1406 6 18549572 18551488 Aed6g1406 6 18549572 18551488 ECH