Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1384 ATGAACGATTCCACAACCCTGAAGCACCACTGCATCGCTTCCCTGAAAACCCTAACACCCCACATCACGTGCCTCGCGGTCCACCGTAACCTCCTCTACGCCGCATCCCTCAACCTCATAAACGTATTCGACCGCTCACATTACTCCCACATCGACGCCTTCAACCAAAGCCCCGCCTCAGGCTTCGTCAAGTCCATCACCTTCACAAACTCAAAAGTCTTCACCGCGCACCAAGACCGCAAGATTCGCGTCTGGCTCATCACTCCTTCAAAACGACACCGTCTCCTCTCCTCACTCCCCACCGTAACGGACCGCCTGCGCCGCTGCGTAATGCCGCGAAACTACGTCAGCGTTCGGCGCCACAAGACGAGGCTCTGGATCCAGCATTGCGACACCGTGTCCGGTTTGGCTGTTAACCAGAGGTTTATGTATTCTGTTTCGTGGGATAAGAGCTTCAAGGTTTGGGACTTGTTGAGTTACCGGTGTTTGGAGTCCGTTAAGGCGCATGAGGACGCCATCAACGCTGTTGCCGTTAGCGCTGACGGCACCGTTTACACGGCTTCAGCGGACGGGAGTATCAAGGTTTGGAGGAGGGACGGCGAGGCGAAAAGGCACGCGTTGGTGAGCACCATTGGGAGGCAGAAGTCGACTGTCAATGCGCTTGCGGTTGACGGCGGCGGCGAGGCGTTGTTTTCCGGTGGTTGCGACGGCGAGATCTGCCGGTGGAAGTGGGAGGAAAACGACGTGGTGAAGATGGAGGCGCTGAGGGGTCATGGTGGGGCCATACTGTGTCTGATCCACGTGGCGGGTTTGTTGGCGAGTGCGTCAGCAGATCTAACGGTTAGGATATGGCGACGGGAAGGAGGGAGTAGCGGGTATTGTTGTAGAGCTGTGTTGGAAGGGCACGAGAAACCGGTGAAGTCGTTGGTGTCATTTTCGGGCGCTGATGGTGACTCAAACGGCGTCGTTACGCTCTTTAGTGGAAGCCTTGACGGGGAGATTAAAGTGTGGGAGGTGTTTGGTTTGGTTTGA 1032 0.563 MNDSTTLKHHCIASLKTLTPHITCLAVHRNLLYAASLNLINVFDRSHYSHIDAFNQSPASGFVKSITFTNSKVFTAHQDRKIRVWLITPSKRHRLLSSLPTVTDRLRRCVMPRNYVSVRRHKTRLWIQHCDTVSGLAVNQRFMYSVSWDKSFKVWDLLSYRCLESVKAHEDAINAVAVSADGTVYTASADGSIKVWRRDGEAKRHALVSTIGRQKSTVNALAVDGGGEALFSGGCDGEICRWKWEENDVVKMEALRGHGGAILCLIHVAGLLASASADLTVRIWRREGGSSGYCCRAVLEGHEKPVKSLVSFSGADGDSNGVVTLFSGSLDGEIKVWEVFGLV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1384 343 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Aed6g1384 343 PRINTS G protein beta WD-40 repeat signature 143 157 IPR020472 -
Aed6g1384 343 PRINTS G protein beta WD-40 repeat signature 272 286 IPR020472 -
Aed6g1384 343 SMART WD40_4 47 86 IPR001680 GO:0005515
Aed6g1384 343 SMART WD40_4 204 243 IPR001680 GO:0005515
Aed6g1384 343 SMART WD40_4 292 338 IPR001680 GO:0005515
Aed6g1384 343 SMART WD40_4 8 44 IPR001680 GO:0005515
Aed6g1384 343 SMART WD40_4 119 156 IPR001680 GO:0005515
Aed6g1384 343 SMART WD40_4 248 285 IPR001680 GO:0005515
Aed6g1384 343 SMART WD40_4 159 197 IPR001680 GO:0005515
Aed6g1384 343 ProSitePatterns Trp-Asp (WD) repeats signature. 325 339 IPR019775 -
Aed6g1384 343 Gene3D - 113 341 IPR015943 GO:0005515
Aed6g1384 343 Gene3D - 3 99 IPR015943 GO:0005515
Aed6g1384 343 SUPERFAMILY WD40 repeat-like 10 338 IPR036322 GO:0005515
Aed6g1384 343 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 6 339 - -
Aed6g1384 343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 166 196 - -
Aed6g1384 343 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 6 339 IPR045182 -
Aed6g1384 343 Pfam WD domain, G-beta repeat 161 196 IPR001680 GO:0005515
Aed6g1384 343 Pfam WD domain, G-beta repeat 255 284 IPR001680 GO:0005515
Aed6g1384 343 Pfam WD domain, G-beta repeat 295 337 IPR001680 GO:0005515
Aed6g1384 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 196 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1384 Aed-Chr6 18413706 18414737 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1384 156 338 Acyl Lipid Metabolism Gene Families AT3G18860 24.339 2.36e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1384 - - gmx:100784592 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1384 6 18413706 18414737 Aed6g1384 6 18413706 18414737 ECH