Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1307 ATGGCTTTGAGGCTTTTAGTATCGCAGGTTGCAAGACGACAGTCCAAATTTGGACAGGTTAAAAGTGTGCTTGCTACAAGCTATTTTTCTGTCAATAAGTTTGGAGATCGTGCAGGGAATAGGCTTTTGGGTGCCCAAGAGAGATTTCAGTCTAGCTACCTTGGTAGTATAGCTCGTCGAGCACGTGATGCGGATGAAGCTGCTGAAGTTGCTTATCTCAAAGAACTTTACCATCAGAATGATCCTGAGGCTGTGATTAGAGTATTTGAAAGCCAGCCATCACTGCATAATAGTCCCTCAGCTCTATCTGAATATGTAAAAGCATTGGTGAAAGTTGATAGGCTTGATGAAAGTGAATTACTGAAGACATTAAGGAGAGGTGGCATGTCCAAGTCAGTGAGTGAGGAAGAAACTGTTGCTGGTCTTTCGGCTTTAAGAAATTTGGGAAACTCAACAAAAGACACTACTATTGGAACTGCCAGTAATCCAATTCATATGGTGGCTAGAGAAGTTTGGAATTTAAAAGATCAGCTATGGCGTACACTTAGGTCCATTGCAGTGGTCTTTTTCTTGATTTCTGGTGTAGGAGCACTCATTGAAGATAAAGGAATTAGTAAAGGACTTGGTATAAATGAAGAAGTGCAACCCAGCATGGAATCAAGTACAAAATTTAGTGATGTAAAAGGTGTTGATGAGGCAAAGGCAGAGCTGGAAGAAATTGTTCACTACCTTCGAGATCCTAAGCGCTTTACTCGTCTTGGTGGTAAGCTTCCCAAAGGAGTTTTGCTTGTTGGTCCACCTGGCACTGGAAAAACAATGTTAGCAAGAGCTATTGCTGGAGAGGCTGGGGTTCCTTTCTTCTCCTGCAGTGGAAGTGAATTTGAAGAGATGTATGTAGGTGTTGGTGCACGAAGGGTGAGGGATCTTTTTTCTGCTGCAAGGAAGCGAGCACCTGCTATAATATTCATTGATGAGATAGATGCTATTGGAGGAAGTCGAAATCCAAAGGACCAAATGTACATGAAGATGACATTAAATCAGTTACTGGTTGAGCTAGATGGATTCAAGCAAAATGAGGGCATAATTGTGATTGGCGCTACTAATTTTCCAGAATCATTGGATAAGGCATTGGTGAGACCTGGGCGGTTTGATCGCCATGTTGATGTTCCCAATCCTGATGTAAAAGGAAGACAGCAAATTTTGGAATCACACATGTCAAAGGTTCTGAAGGCTGATGATGTTGATCTAATGATCATTGCTCGAGGAACACCTGGGTTCTCTGGTGCTGATCTTGCAAACTTGATTAACATTGCTGCTATCAAGGCTGCAATGGATGGCGCCAAAGCCGTGGGCATGGTTGATTTAGAGCATGCAAAAGACAAGATCCTGATGGGAAGTGAACGCAAGTCAGCTGTCATATCCGATGAGTCACGAAAGTTGACTGCTTTCCATGAGGGTGGCCATGCCCTTGTGGCCATTCACACTGATGGGGCCCTCCCTGTTCACAAGGCAACAATAGTTCCCCGTGGAATGGCTCTTGGCATGGTTACTCAATTGCCTGACAAGGATGAGACCAGCATTTCCCGTAAACAGATGCTTGCTCGGCTTGATGTTTGCATGGGAGGCCGGGTCGCCGAAGAGATCATTTTCGGAGAGAACGAAGTCACTTCCGGCGCATCCTCGGATCTCAAGCAAGCAACTAGTCTGGCAAGGGAGATGGTTACCAAATACGGCATGGGAAGTGAAGTTGGACTAGTCACTCATGATTACAAAGACGATGGTAGGAGCATGAGCTCAGAGACTAGGCTTCTTATCGAGAAAGAGGTGAAGCAATTCCTGGAGAAGGCTTACAACAATGCAAAAACTATTCTCACCACTCACAACAGGGAGCTTCATGCACTTGCAAATGCTCTTCTGGAGCATGAAACTCTCACAGGAACTCAGATAAAGGCATTGCTTGCCCAAGTGTTTTCACTAGGAGGAACTCAACTCATGCACCTCGGAGTCTAG 2010 0.4463 MALRLLVSQVARRQSKFGQVKSVLATSYFSVNKFGDRAGNRLLGAQERFQSSYLGSIARRARDADEAAEVAYLKELYHQNDPEAVIRVFESQPSLHNSPSALSEYVKALVKVDRLDESELLKTLRRGGMSKSVSEEETVAGLSALRNLGNSTKDTTIGTASNPIHMVAREVWNLKDQLWRTLRSIAVVFFLISGVGALIEDKGISKGLGINEEVQPSMESSTKFSDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMYVGVGARRVRDLFSAARKRAPAIIFIDEIDAIGGSRNPKDQMYMKMTLNQLLVELDGFKQNEGIIVIGATNFPESLDKALVRPGRFDRHVDVPNPDVKGRQQILESHMSKVLKADDVDLMIIARGTPGFSGADLANLINIAAIKAAMDGAKAVGMVDLEHAKDKILMGSERKSAVISDESRKLTAFHEGGHALVAIHTDGALPVHKATIVPRGMALGMVTQLPDKDETSISRKQMLARLDVCMGGRVAEEIIFGENEVTSGASSDLKQATSLAREMVTKYGMGSEVGLVTHDYKDDGRSMSSETRLLIEKEVKQFLEKAYNNAKTILTTHNRELHALANALLEHETLTGTQIKALLAQVFSLGGTQLMHLGV 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1307 669 Gene3D - 209 391 IPR027417 -
Aed6g1307 669 PANTHER METALLOPROTEASE M41 FTSH 8 658 - -
Aed6g1307 669 Pfam AAA+ lid domain 413 456 IPR041569 -
Aed6g1307 669 SUPERFAMILY FtsH protease domain-like 472 655 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aed6g1307 669 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 1 655 IPR005936 GO:0004176|GO:0004222|GO:0016020
Aed6g1307 669 Gene3D - 392 465 - -
Aed6g1307 669 Pfam ATPase family associated with various cellular activities (AAA) 261 390 IPR003959 GO:0005524|GO:0016887
Aed6g1307 669 ProSitePatterns AAA-protein family signature. 361 379 IPR003960 GO:0005524|GO:0016887
Aed6g1307 669 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL-LIKE 8 658 - -
Aed6g1307 669 CDD AAA 258 390 - -
Aed6g1307 669 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 213 653 IPR005936 GO:0004176|GO:0004222|GO:0016020
Aed6g1307 669 Pfam Peptidase family M41 472 651 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aed6g1307 669 Gene3D Peptidase M41 466 657 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aed6g1307 669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 478 IPR027417 -
Aed6g1307 669 SMART AAA_5 257 393 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1307 Aed-Chr6 17829582 17835737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1307 61 653 Miscellaneous Gene Families AT5G53170 51.540 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1307 K08955 - gmx:100776957 1117.83