Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1287 ATGGCATTTCGATTTGGGGTCCTTATTCTTGCTTTGCTAATTTGTTTGAATGTCAATTCTGTGGAATCTGATGATGGAGCAACGTTGTTAGAGATAAAGAAGTCATTCAGGGATGTGGATAACGTTCTCTATGATTGGACTGACTCACCTTCATCAGATTATTGTGCCTGGAGAGGCATCACATGTGATAATATCACCTTTAATGTTGTTGCGCTCAACCTTTCAGGGTTGAATCTTGATGGCGAAATTTCACCTGCAATAGGGAAACTTCAGAGTTTGGTCTCTATTGACCTCAAAGAAAACACGTTATCTGGGCAGATACCAGATGAGATTGGTGACTGTTCTTCTTTGAAGAACTTGGACTTGTCATTTAATGAAATTAGAGGGGATATACCATTTTCTATTTCTAAGTTGAAACAGATGGAGAATCTGATTTTGAAGAACAACCAGTTGATTGGACCAATTCCTTCAACTTTGTCTCAGATTCCTGATTTGAAGATTCTAGACTTGGCTCAGAATAATCTTAGTGGAGAAATACCAAGGCTTATATATTGGAACGAAGTTTTGCAGTATCTGGGCTTGAGAGGGAACAATTTGGTTGGTTCACTATCACCAGACATGTGCCAGTTAACTGGGCTGTGGTATTTTGATGTGAGAAATAATAGCTTGACAGGAAGTATTCCAGAGAACATAGGCAATTGTACTACCTTCCAGGTCTTGTATGTAATCCAATTGCATGACTTTGCCATACCTTGGTCTTATTTTCTTTTTACCTTTCTAATGTCTTCTGTTGATGCCAGGGATTTATCCTACAACCAGTTAACTGGAGAGATACCATACAATATTGGATTCTTGCAAGTAGCAACTTTGTCATTGCAAGGCAATAAACTCTCTGGACATATTCCATCGGTGATCGGTCTCATGCAAGCACTTGCTGTCCTAGACTTGAGCTGTAACATGTTAAGTGGATCAATCCCTCCTATTTTGGGAAATTTGACATACACAGAAAAATTGTACTTGCATGGAAACAAGCTAACTGGCTTCATTCCCCCAGAGCTTGGAAATATGACAAAGCTTCACTATTTGGAACTGAATGATAACCATTTAAGTGGACATATCCCACCTGAGCTTGGAAAGCTTACTGATCTGTTTGACTTAAATGTTGCTAACAATAATCTAGAGGGGACAATTCCTAGTAATATTAGCTCATGTAAAAATCTCAACAGCCTCAATGTGCATGGGAACAGGTTGAATGGATCAATTCCCCCTTCTTTGCAGAGCTTGGAGAGCATGACCTCTTTGAATCTTTCTTCCAACAATCTTCAGGGCGCAATTCCAATTGAACTGTCGCGGATTGGTAATTTGGATACATTGGATGTTTCAAAGAATAATTTAGTTGGTTCCATCCCTTCTTCCCTTGGTGACTTGGAACATCTTCTGAAGTTGAATCTGAGCAGGAACAATTTAGCAGGACTTATTCCTGCAGAATTTGGTAATCTTAGAAGTGTTATGGAAATTGATCTTTCAAATAATGAACTCTCTGGCTTGATTCCTGAAGAACTTAGTCAGCTTCAGAACATGATATCCTTGAGACTTGAAAACAACAAATTAACCGGTGATGTGGCATCACTTGCAAATTGCCTTAGTCTCTCCCTGCTTAATGTGTCCTATAACAAACTATTTGGTGTTATCCCCATGAGTAACAACTTTACCAGGTTTCCCCCTGACAGTTTCATTGGAAACCCTGGTCTCTGTGGTAATTGGCTGAATTTGCCGTGTCATGCTGCTCGCCCTTCAGAGCGAGTTACATTATCTAAGGCTGCCATTCTTGGAATTACTCTTGGTGCCCTTGTGATTCTTCTTATGGTATTGCTGGCAGCATGCCGGCCACACAGTCCTCCTTTTCCTGATGGATCACTTGACAAGCCAGTTAATTACTCCCCTCCAAAACTAGTGATCCTTCATATGAACATGGCACTTCATGTGTATGAAGATATTATGAGGATGACTGAAAACCTGAGTGAGAAGTATATAATTGGATATGGTGCATCAAGTACAGTTTATAAATGTGTTCTCAAGAATTGCAAGCCAGTGGCTATCAAGAGGATCTATTCTCACTATCCCCAATGTATTAAAGAATTTGAAACTGAACTCGAGACGGTTGGCAGCATCAAGCACCGGAATCTGATATTGTCCAAGGCAGCAACCAATGCTGTGATGGAAACAGTTGATGCAGACATCACTGCCACATGCAAGGACCTGGGAGCTGTGAAAAAGGTTTATCAGCTTGCTCTATTGTGCACAAAGAGGCAGCCGGCTGATAGGCCGACAATGCACGAAGTGACACGTGTGCTCGGAAGCCTTGTGCCGTCGGGCACCCCACCAAAACAACTGGCTGCACTACCACCACCACCTTCTTCAAATAATCCATCTGCCAAAGTGCCATGCTATGTGGATGAGTATGCCAACCTCAAGACTCCACACTTGGTGAACTGCTCCTCAATGAGCACCTCAGATGCCCAACTCTTTCTCAAGTTTGGAGAAGTAATCTCTCAAAACAGTGAGTGA 2568 0.4143 MAFRFGVLILALLICLNVNSVESDDGATLLEIKKSFRDVDNVLYDWTDSPSSDYCAWRGITCDNITFNVVALNLSGLNLDGEISPAIGKLQSLVSIDLKENTLSGQIPDEIGDCSSLKNLDLSFNEIRGDIPFSISKLKQMENLILKNNQLIGPIPSTLSQIPDLKILDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGSLSPDMCQLTGLWYFDVRNNSLTGSIPENIGNCTTFQVLYVIQLHDFAIPWSYFLFTFLMSSVDARDLSYNQLTGEIPYNIGFLQVATLSLQGNKLSGHIPSVIGLMQALAVLDLSCNMLSGSIPPILGNLTYTEKLYLHGNKLTGFIPPELGNMTKLHYLELNDNHLSGHIPPELGKLTDLFDLNVANNNLEGTIPSNISSCKNLNSLNVHGNRLNGSIPPSLQSLESMTSLNLSSNNLQGAIPIELSRIGNLDTLDVSKNNLVGSIPSSLGDLEHLLKLNLSRNNLAGLIPAEFGNLRSVMEIDLSNNELSGLIPEELSQLQNMISLRLENNKLTGDVASLANCLSLSLLNVSYNKLFGVIPMSNNFTRFPPDSFIGNPGLCGNWLNLPCHAARPSERVTLSKAAILGITLGALVILLMVLLAACRPHSPPFPDGSLDKPVNYSPPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRIYSHYPQCIKEFETELETVGSIKHRNLILSKAATNAVMETVDADITATCKDLGAVKKVYQLALLCTKRQPADRPTMHEVTRVLGSLVPSGTPPKQLAALPPPPSSNNPSAKVPCYVDEYANLKTPHLVNCSSMSTSDAQLFLKFGEVISQNSE 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1287 855 Gene3D Ribonuclease Inhibitor 313 596 IPR032675 -
Aed6g1287 855 SMART LRR_typ_2 500 523 IPR003591 -
Aed6g1287 855 SMART LRR_typ_2 90 114 IPR003591 -
Aed6g1287 855 SMART LRR_typ_2 308 332 IPR003591 -
Aed6g1287 855 SMART LRR_typ_2 356 380 IPR003591 -
Aed6g1287 855 SMART LRR_typ_2 210 234 IPR003591 -
Aed6g1287 855 SMART LRR_typ_2 162 186 IPR003591 -
Aed6g1287 855 SMART LRR_typ_2 428 452 IPR003591 -
Aed6g1287 855 SMART LRR_typ_2 524 551 IPR003591 -
Aed6g1287 855 SMART LRR_typ_2 476 499 IPR003591 -
Aed6g1287 855 SUPERFAMILY L domain-like 252 585 - -
Aed6g1287 855 SUPERFAMILY L domain-like 24 260 - -
Aed6g1287 855 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 263 730 - -
Aed6g1287 855 MobiDBLite consensus disorder prediction 796 810 - -
Aed6g1287 855 ProSiteProfiles Leucine-rich repeat profile. 116 139 IPR001611 GO:0005515
Aed6g1287 855 MobiDBLite consensus disorder prediction 790 811 - -
Aed6g1287 855 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 6 241 - -
Aed6g1287 855 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 729 842 - -
Aed6g1287 855 Pfam Leucine rich repeat 454 513 IPR001611 GO:0005515
Aed6g1287 855 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 241 - -
Aed6g1287 855 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 729 842 - -
Aed6g1287 855 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 263 730 - -
Aed6g1287 855 Gene3D Ribonuclease Inhibitor 187 303 IPR032675 -
Aed6g1287 855 Gene3D Ribonuclease Inhibitor 22 186 IPR032675 -
Aed6g1287 855 Gene3D Phosphorylase Kinase; domain 1 646 732 - -
Aed6g1287 855 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Aed6g1287 855 SUPERFAMILY Protein kinase-like (PK-like) 650 731 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1287 Aed-Chr6 17649460 17657770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1287 727 789 Receptor kinase-like Gene Family AT5G07180 63.492 9.87e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1287 K20718 - cpap:110809270 1301.58