Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1244 ATGGATGAAGACCAAATAGAAGGTTGTGTGAGCGGGTACTTGAAGCAGAAAGGGTTTACGCAAAACGATGAACAGCTTCAACTCACCAACACCGATTCTTCTCTCCAACCCGACACTCTCAATCGCACCCAATTGGAGAGAGGTTCTGCACGATACCATGATGGGTATGGTAGACTAAGATCGTGGGCATACAGGTCACTTGACTCATACAAGCATGAGTTGCTGCGTGTGCTTTATCCAGTATTTATTCATTGCTTCATGGATCTTGTGGCAAAAGGACATCTTCAGGAAGCATGGGACTTTTTCAATACCTTTCGTGAAGACCATGAAAGGATGCACTCACGAGACCTTCAAAAGTTGGAACTAGTTCTTTCTCCTACTCATTTGGCGGAAATGGAATTCGCTCATTCCCTTAGGCAGAGTAAATTCAACATAAAGATATGTGGGTATTCTTATGAGCTTCTGTTGCAACATCTACACGGTATGCAATCCACCACAATAATTGGTGTTATCAATGAGCATATTAGATTTCAAGTTATAGCTGGGCAACCTAGCTCAATTTCTGATGATCCAGAATCTGTTACCCTCACTGGAGGCATCCAGGATGCAGCGAACCAGATAAAGCAGAAAGAAATACTTTGGGGGATGTTTGAAGACTCTATAGAAGACCGCATAGATAAGGCTGGGGCCTTGCTTTCTGACACAGAAAAGGGTGAAGGGGAAGGCAAAGAAGGAGAGAAAGATGAGAATAAGAAAAGGTCAATTGATGGAGGAAAGCAAGGTAGTTCAATAAAAAAGGTAAAAAAGGACAAAGCCGGTAGTGCAACAGGGAAAAATGCTAAACCAGAAGCTAAGACTATATCTGCAGCACCTCGGATTAAACAAGAGCTACCCTTGCCCACAGTGTATTCTCCCAATTCAACTGATATAGAACTGTCAATCATAGAAGATTTAAGGAATCGTGTACAATTGAGTAGCGTTGCCCTCCCTTCAGTTAACTTCTACACATTTGTAAATACGCATAATGGTTTAAGCTGTTCATCAATATCCCACGATGGATCATTGATTGCTGGAGGATTTTCTGACTCATCACTTAAGGTCTGGGATATGGCGAAACTTGAACGACAGCCCACCACTTCTTTTTTGCAGGGAAGGAATGACACATCACAAAATGAACAAATTATTGGGCAAAATAGTGGGAAAAGACAGTACTCATTGTTTCAAGGTCATTCAGGGCCAGTCTATGCTGCCACTTTCAGTCCTGCTGGGGATTTTCTTCTTTCCTCTTCAGCAGACAAAACAATTCGATTATGGAGTACAAAGCTTAATGCCAATCTTGTTTGTTACAAGGGTCACAATTACCCTATCTGGGGTGTTCAGTTTAGTCCTGCAGGGCATTATTTTGCCAGCTGTTCACATGACAGAACAGCTAGGATTTGGTCCATGGACAGAGTACAACCTTTAAGAATAATGGCAGGGCATTTGTCAGATGTTGATTGTGTGCAGTGGCATTCCAACTGCAACTACATTGCTACTGGCTCCAGTGACAAAACAGTTCGACTGTGGGATGTGCAGAGTGGGGAATGTGTTCGGGTTTTCATTGGTCACAGGAGTATGATTTTGTCCTTGGCAATGTCTTCTGATGGTCGCTACATGGCATCTGGTGATGAAGATGGCACAATCATGATGTGGGACATCTCTAGTGGCGGTTGCATCACGCCTTTAGTCGGTCACACCTCATGCATTTGGTCACTTGCTTTCAGCTGTGAAGGTTCTCTTCTAGCATCCGGATCCGCTGATTGCACTGTCAAATTTTGGGATGTAACTACAGGTATAAAGGTTCCAAGGAGTGAAGAAAATTTTCTCGAAGGAATCTTCTATTTGCAGCTGGAGCTATTGCAAAGAGCGGCTGATAGTGTGTCTTCAAATTTCAATGTGACAATTCTGACTTGA 1953 0.4296 MDEDQIEGCVSGYLKQKGFTQNDEQLQLTNTDSSLQPDTLNRTQLERGSARYHDGYGRLRSWAYRSLDSYKHELLRVLYPVFIHCFMDLVAKGHLQEAWDFFNTFREDHERMHSRDLQKLELVLSPTHLAEMEFAHSLRQSKFNIKICGYSYELLLQHLHGMQSTTIIGVINEHIRFQVIAGQPSSISDDPESVTLTGGIQDAANQIKQKEILWGMFEDSIEDRIDKAGALLSDTEKGEGEGKEGEKDENKKRSIDGGKQGSSIKKVKKDKAGSATGKNAKPEAKTISAAPRIKQELPLPTVYSPNSTDIELSIIEDLRNRVQLSSVALPSVNFYTFVNTHNGLSCSSISHDGSLIAGGFSDSSLKVWDMAKLERQPTTSFLQGRNDTSQNEQIIGQNSGKRQYSLFQGHSGPVYAATFSPAGDFLLSSSADKTIRLWSTKLNANLVCYKGHNYPIWGVQFSPAGHYFASCSHDRTARIWSMDRVQPLRIMAGHLSDVDCVQWHSNCNYIATGSSDKTVRLWDVQSGECVRVFIGHRSMILSLAMSSDGRYMASGDEDGTIMMWDISSGGCITPLVGHTSCIWSLAFSCEGSLLASGSADCTVKFWDVTTGIKVPRSEENFLEGIFYLQLELLQRAADSVSSNFNVTILT 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1244 650 ProSitePatterns Trp-Asp (WD) repeats signature. 510 524 IPR019775 -
Aed6g1244 650 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 491 528 - -
Aed6g1244 650 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 533 569 - -
Aed6g1244 650 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 575 611 - -
Aed6g1244 650 SUPERFAMILY Taf5 N-terminal domain-like 43 180 IPR037264 -
Aed6g1244 650 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 449 483 - -
Aed6g1244 650 Pfam WD40 associated region in TFIID subunit, NTD2 domain 48 175 IPR007582 -
Aed6g1244 650 SMART WD40_4 526 565 IPR001680 GO:0005515
Aed6g1244 650 SMART WD40_4 399 439 IPR001680 GO:0005515
Aed6g1244 650 SMART WD40_4 330 369 IPR001680 GO:0005515
Aed6g1244 650 SMART WD40_4 442 481 IPR001680 GO:0005515
Aed6g1244 650 SMART WD40_4 568 607 IPR001680 GO:0005515
Aed6g1244 650 SMART WD40_4 484 523 IPR001680 GO:0005515
Aed6g1244 650 ProSitePatterns Trp-Asp (WD) repeats signature. 594 608 IPR019775 -
Aed6g1244 650 PRINTS G protein beta WD-40 repeat signature 510 524 IPR020472 -
Aed6g1244 650 PRINTS G protein beta WD-40 repeat signature 426 440 IPR020472 -
Aed6g1244 650 PRINTS G protein beta WD-40 repeat signature 594 608 IPR020472 -
Aed6g1244 650 ProSiteProfiles Trp-Asp (WD) repeats profile. 533 574 IPR001680 GO:0005515
Aed6g1244 650 Gene3D - 235 487 IPR015943 GO:0005515
Aed6g1244 650 MobiDBLite consensus disorder prediction 231 276 - -
Aed6g1244 650 ProSitePatterns Trp-Asp (WD) repeats signature. 552 566 IPR019775 -
Aed6g1244 650 Gene3D - 563 623 IPR015943 GO:0005515
Aed6g1244 650 ProSiteProfiles Trp-Asp (WD) repeats profile. 575 616 IPR001680 GO:0005515
Aed6g1244 650 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 378 IPR001680 GO:0005515
Aed6g1244 650 SUPERFAMILY WD40 repeat-like 330 614 IPR036322 GO:0005515
Aed6g1244 650 CDD WD40 342 611 - -
Aed6g1244 650 ProSiteProfiles Trp-Asp (WD) repeats profile. 491 532 IPR001680 GO:0005515
Aed6g1244 650 PANTHER CANNONBALL-RELATED 1 620 - -
Aed6g1244 650 MobiDBLite consensus disorder prediction 231 292 - -
Aed6g1244 650 ProSitePatterns Trp-Asp (WD) repeats signature. 356 370 IPR019775 -
Aed6g1244 650 ProSiteProfiles Trp-Asp (WD) repeats profile. 407 439 IPR001680 GO:0005515
Aed6g1244 650 Pfam WD domain, G-beta repeat 339 369 IPR001680 GO:0005515
Aed6g1244 650 Pfam WD domain, G-beta repeat 486 523 IPR001680 GO:0005515
Aed6g1244 650 Pfam WD domain, G-beta repeat 446 481 IPR001680 GO:0005515
Aed6g1244 650 Pfam WD domain, G-beta repeat 570 607 IPR001680 GO:0005515
Aed6g1244 650 Pfam WD domain, G-beta repeat 407 439 IPR001680 GO:0005515
Aed6g1244 650 Pfam WD domain, G-beta repeat 527 565 IPR001680 GO:0005515
Aed6g1244 650 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1 620 IPR037783 -
Aed6g1244 650 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 490 IPR001680 GO:0005515
Aed6g1244 650 Gene3D TFIID subunit TAF5, NTD2 domain 29 181 IPR037264 -
Aed6g1244 650 CDD TAF5_NTD2 52 179 IPR007582 -
Aed6g1244 650 Gene3D - 488 562 IPR015943 GO:0005515
Aed6g1244 650 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 407 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1244 Aed-Chr6 17235195 17243312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1244 474 611 Miscellaneous Gene Families AT5G08390 33.333 5.67e-22 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1244 K03130 - gmx:100790500 1133.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1244 6 17235195 17243312 Aed4g1738 4 21739712 21745830 PCT