Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1234 ATGCTTGTTGCGGTTGGAGCATCGTGGGATCTGAATTGGTTCCTGCAATTGTTCCTCTCCGTCATCGTCGTAGCCGTTGGGGTTCACTATTTCGTCAAGGCCACCGCTTCCAAATACTTCCTCGTTGACGCCAATTTCGAAGGGGACCACCACCACTCCCTCGCCGCCGACGCAATGCCCGCCGCCGCCGATCCTCCCTGCGCCGTCTGCGCCACCCCCGCCTCCAAGAAGTGCTCGCGCTGCAAAGCCGTCAGATATTGTTCACAAGAATGTCAGCAGTCACATTGGAAGTCTGGGCATAAGACCGAGTGCAAGGATTATCGTGATGCCAGTGCAAGAAGCTCGGCTCAGAATGGGGTAATTAGTCGTGGGTTTATGGCTTCTGCTGCTGGGGGAAAAAGCTCGCCGTCGATTGCGCTGGTACCTGGTTGTGGAGCTGGAGCAATTTCCAGGCCAATCAAGCAGGCTAAAGATGTTCTTTTTCCTTATGATGAATTTGTCAAGTTTTTTAACTGGGACAATCCAGGATTTCCTCCTTGTGGGCTCTTGAATTGTGGAAACAGTTGCTTTGCAAATGTGGTTCTTCAGTGCCTCTCATTCACAAGGCCACTTGTTGCCTACTTGTTGGAGAAGGGCCACCGCAGAGAATGCAGTTGTAATGATTGGTGCTTTCTATGTGAATTTGAAAATCATGTTGAAAGAACAAAGGGAAGTTCTCAGGCATTTTCTCCTATGAATATTCTGTCTCGTTTGCCTAATATTGGTGGTACTCTGGGCTATGGAAGACAAGAGGATGCTCATGAGTTCATGAGGTTTTCCATTGATACTATGCAATCTGTTTGCCTTGATGAATTTGGTGGAGAAAAAGCTGTCCTTCCTAACCTTCAGGAGACTACCCTTATTCAACACATTTTTGGTGGCCGTCTTCAATCTGAGGTGAATTGCACAAAATGTGATAAGATATCAAATCAGTATGAAAATATGATGGACTTGACAGTTGAAATTCATGGTGATGCTGCCTCCTTGGAGGAATGTCTAGACCAGTTTACTGCCAGGGAGTGGCTTGATGGGGATAATATGTATAAATGTGAGGGGTGCAAGGATTATGTCAAGGCATGGAAACGCCTTACTGTGAAATGTGCTCCAAATATTCTTACAATTGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGAAAACTTAACAAGAGAATAGCCTTTCCCGAGACTTTAAATCTTAGCCCTTATATGAGTGAAGCTGGAGATGGGTCTGATATTTATAAGCTGTATGGTGTTGTAGTACATATTGACATGCTAAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAGGATTTCCGGGGAAACTGGTATAGGATTGATGACTGGAAGGTTATGACTGTGGAGGTGGAAGAGGTACTTTCTCAGGGAGCATACATGCTCTTGTATAGCAGGTGTAGTGCCCGGCCATCAGGCCTTCAAATTCAAACTACTGAATCTTCAGGGATAGCAGAAGTTCAAACAAAAGTGGAAGTGGAAGCGGAAGCAGAAGCGAAAGTGGAAGTGGAGCCTGGACAAACTGAACAAGATGAATGCCTCTCAAATATGAAGACTTTGACTTATAGTAGAAGTTCCGAGGCTTTGCCGTCTGATGTTAGTCCAGAATCACAAATTTCTTCCATCTATGACCTTGAGTCTTCTGGATTGATCTCACAAGCCAAAATAGAACAGTCTGAGGATATGGACATGATGGATGTTGATTCGACTGGTATTGCAAATGAGATTTGTTGTGGTGCTGCTGATGAATCATCTTATGTGCCTATTTCTCAAACAGACAGTGATTTGGGGGATGCAGATATGGGCAAATCATTAGAGGAGACTTCAGGTTGTAAGGAAGAGCAAGGTGATACTGATATAGTTACGTCTGGTCCCTGTAAGGAAGAGCAAAATGACTCTTCCTTCTTTGATAAGCATTCTTCTGTTTCGTCACAGGATCGTCAAAGCACGGAAGAAGATTCAGAACATAAAGATGTGGTTAACTGCAAGTTGATTACAGCTAAAGATAATGCATATTATTATAGTAATGGATATGTCAGTGCACACGAGTCTTCAATTCCAGTTCAAGACGCATGCACACAAGTTTCTGGCATCAGTTCTTTTCCCACTGAAAATGAAAAAGGAAATGGAATTAAGAAAGTGGAAGCAGTATCAGCTGACATCTAG 2223 0.4399 MLVAVGASWDLNWFLQLFLSVIVVAVGVHYFVKATASKYFLVDANFEGDHHHSLAADAMPAAADPPCAVCATPASKKCSRCKAVRYCSQECQQSHWKSGHKTECKDYRDASARSSAQNGVISRGFMASAAGGKSSPSIALVPGCGAGAISRPIKQAKDVLFPYDEFVKFFNWDNPGFPPCGLLNCGNSCFANVVLQCLSFTRPLVAYLLEKGHRRECSCNDWCFLCEFENHVERTKGSSQAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFSIDTMQSVCLDEFGGEKAVLPNLQETTLIQHIFGGRLQSEVNCTKCDKISNQYENMMDLTVEIHGDAASLEECLDQFTAREWLDGDNMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRIAFPETLNLSPYMSEAGDGSDIYKLYGVVVHIDMLNASFFGHYICYIKDFRGNWYRIDDWKVMTVEVEEVLSQGAYMLLYSRCSARPSGLQIQTTESSGIAEVQTKVEVEAEAEAKVEVEPGQTEQDECLSNMKTLTYSRSSEALPSDVSPESQISSIYDLESSGLISQAKIEQSEDMDMMDVDSTGIANEICCGAADESSYVPISQTDSDLGDADMGKSLEETSGCKEEQGDTDIVTSGPCKEEQNDSSFFDKHSSVSSQDRQSTEEDSEHKDVVNCKLITAKDNAYYYSNGYVSAHESSIPVQDACTQVSGISSFPTENEKGNGIKKVEAVSADI 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1234 740 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 181 196 IPR018200 GO:0004843|GO:0006511
Aed6g1234 740 CDD Peptidase_C19E 179 484 - -
Aed6g1234 740 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 180 486 IPR028889 -
Aed6g1234 740 Pfam Ubiquitin carboxyl-terminal hydrolase 180 483 IPR001394 GO:0004843|GO:0016579
Aed6g1234 740 ProSitePatterns Zinc finger MYND-type signature. 67 104 IPR002893 -
Aed6g1234 740 Gene3D Cysteine proteinases 177 494 - -
Aed6g1234 740 MobiDBLite consensus disorder prediction 618 633 - -
Aed6g1234 740 Pfam MYND finger 67 104 IPR002893 -
Aed6g1234 740 MobiDBLite consensus disorder prediction 607 676 - -
Aed6g1234 740 ProSiteProfiles Zinc finger MYND-type profile. 67 104 IPR002893 -
Aed6g1234 740 SUPERFAMILY HIT/MYND zinc finger-like 64 109 - -
Aed6g1234 740 MobiDBLite consensus disorder prediction 643 662 - -
Aed6g1234 740 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 20 702 - -
Aed6g1234 740 SUPERFAMILY Cysteine proteinases 176 488 IPR038765 -
Aed6g1234 740 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 702 - -
Aed6g1234 740 Gene3D - 54 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1234 Aed-Chr6 17105743 17111710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1234 5 491 Miscellaneous Gene Families AT4G31670 66.530 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1234 K11855 - gmx:100820594 1264.98