Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1210 ATGTTCCCAAAAAACCCTTCATACACAAACCCAGAACCCTGCCAGCACCTTGCTGAGTACAAGCTCAAGCATGGCTTCAATGGCTACAGAGCTATCCAAAAGCTCCTCGTGACCTCTCCAATTGGGAAAACCAGTGTGAAGAAACCCAGCAACACAAAGAGATTGATCAAGAGGAGGAGGTTGGTTTCTTCTGGGGTTGGATTGGATTTGCAGAAATCTAAGTGTGGAGTTGGAGTTTCCACCAAAGATCTGAGGGAGAAATCGTGTTATCCTATGGGGTTGAGAGGGTTGAACAATCTCGGCAGCACGTGCTTCATGAATTCTGTGTTGCAAGTGTTGTTACATGCTCCTCCTTTCAGGGACTATTTCCTGAGTGGTGGTCACAGGTTGGAGGCTTGTCATCATAGACGAACCACGGATCTGATGTGTTGTTTGCTTTGTGATGTCAATGCTGTTTTTTCGGCTGCGTATTCTGGGGATCGAAGCCCTTATAGTCCTGCTCAGTTTCTCTACAGCTGGTGGCAGCATTCAGCAAATTTAGCAAGTTATGAGCAGCAGGATGCTCACGAGTTTTTCATTTCGATGTTAGATGCTATCCACGAGAAAGAGGGCAAAACAAGGAATGGAAGCAAAGGTAATGGAGACTGTCAATGCATTGCTCATAAGGTGTTCTATGGGTTATTGAGATCAGATGTTACCTGTATGGCCTGTGGATTCACCTCAACAACCTATGACCCTTGTGTGGACATTTCACTTAACTTGGACACCAATGTCTCTTCAACAGAAAAGGGTAAAAAACTTACCAAACAAAATGAGGATGGAAGTATGTCAACACTTTCGGGTTGTTTAGATTTGTTCACAAGGCCAGAGAAGTTGGGGTCAGATCAGAAACTTTACTGCCAAAATTGCCGGGAAAGGCAGGACTCGTTGAAGCAAATGTCTATTAGAAAGCTTCCATTAGTACTTAGTTTGCATGTAAAACGATTTGAGCACTCTTTTGTTAAAAAGAGTTCAAGAAAAATAGATCGCTACCTACACTTCCCATTTTCCTTAGACATGACTCCATATCTGTCCTCCTCAATCCTCAGAGCCAGATATGGAAATAGAATTTTTACTTTTGGGGGTGATCAATCAGATATGTTTTCTGAGTTTGAGATTTTTGCAGTGGTGACACATTCGGGGACGCTTGAGTCTGGCCACTATGTTTCTTTCGTGCGTTTAAGGAATCAATGGTACAGATGCGACGATGCTTGGATAACTGTGGTTGATGAGGCTACAGTCAGAGCTTCACAGTGTTACATGATTTTTTATGTGCAGAAGACTCCGCACAATAAAGCAAATGAAGACCCAAGTCATGTGCCAAATTCCCCCGGAAGAGAGCTATTTCTTCCTATTGCTGGATGTTGCTAA 1410 0.4333 MFPKNPSYTNPEPCQHLAEYKLKHGFNGYRAIQKLLVTSPIGKTSVKKPSNTKRLIKRRRLVSSGVGLDLQKSKCGVGVSTKDLREKSCYPMGLRGLNNLGSTCFMNSVLQVLLHAPPFRDYFLSGGHRLEACHHRRTTDLMCCLLCDVNAVFSAAYSGDRSPYSPAQFLYSWWQHSANLASYEQQDAHEFFISMLDAIHEKEGKTRNGSKGNGDCQCIAHKVFYGLLRSDVTCMACGFTSTTYDPCVDISLNLDTNVSSTEKGKKLTKQNEDGSMSTLSGCLDLFTRPEKLGSDQKLYCQNCRERQDSLKQMSIRKLPLVLSLHVKRFEHSFVKKSSRKIDRYLHFPFSLDMTPYLSSSILRARYGNRIFTFGGDQSDMFSEFEIFAVVTHSGTLESGHYVSFVRLRNQWYRCDDAWITVVDEATVRASQCYMIFYVQKTPHNKANEDPSHVPNSPGRELFLPIAGCC 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1210 469 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 95 440 IPR028889 -
Aed6g1210 469 Gene3D Cysteine proteinases 89 447 - -
Aed6g1210 469 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 6 51 - -
Aed6g1210 469 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 50 465 - -
Aed6g1210 469 SUPERFAMILY Cysteine proteinases 91 439 IPR038765 -
Aed6g1210 469 PANTHER UBIQUITIN C-TERMINAL HYDROLASE 22 6 51 - -
Aed6g1210 469 PANTHER UBIQUITIN C-TERMINAL HYDROLASE 22 50 465 - -
Aed6g1210 469 Pfam Ubiquitin carboxyl-terminal hydrolase 95 437 IPR001394 GO:0004843|GO:0016579
Aed6g1210 469 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 96 111 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1210 Aed-Chr6 16841328 16845400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1210 96 449 Miscellaneous Gene Families AT2G24640 30.220 4.57e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1210 K11366 - gmx:100789632 819.69