Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1140 ATGCAACTAACAAAGCTATCATCAACCGCTGCAACAGCACTCACCAGTGTCACCACCGCCGCCGCAACGACGTCGTTCCAAGTCCAACTCCCACCACACACCACAAAACGCCGCGTGGCAGAGCAAACCTGCCTCGCCCTCCTCAGCACGTGCGACACGCTCACCACCCTAACGCGAATCCACGCCCTCATCCTGAAACTCGGCCTCCACCACAACCCCCTCGTCCTCACCAAGTTCGCCTTCACCTCCTCCACCTTCAACTCCGTCCACTACGCCGCCAGCGTCGTTTTCCCAAATGACGAAACCACCCCCCACCCCGTCCACGATGCCTTCCTCTTTAACACGCTCATCAGAGCCTTCGCCCAGACCACGCACTCTAAACCCCACGCCCTGCGCCTCTACAGCACCATGCTGCGGCGCGCCGTTTCTCCGAACAAGTTCACCTTCCCGTTCGTGCTCAAGGCCTGCGCCGGGATCGCGAGCCTGCCGTTGGCGGAGACGGTGCATGCCTCGGTCGTGAAGCTCGGCTTCGATGAGGATACCCACGTGCGGAACACCATGGTCCACATGTATTGCTGTTGCGAATGCAAGGAAGGGGCTGGGCCTGTGTCTGCTAAGAAGGTGTTCGATGAAAGTCCTGAGAAGGATTCCGTCACGTGGAGCGCCATGATTGGAGGGTACGCACGTGCTGGGAATTCCGCACGCGCGGTTACGTTGTTCAGAGAGATGCAGGTTATGGGAGTATGTCCTGACGAGATCACCATGGTTTCTGTATTGTCTGCGTGTGCTGATTTGGGTGCGCTCGAGTTAGGGAAGTGGTTAGAGTCTTACGTTGAAAGGAAGAACATAACAAAGCCCGTGGAGTTGTGTAACGCGCTGATAGACATGTTGGCCAAGTGTGGTGATGAGATGGGGAGGGAGATAAAGAGAGCAGGGTATGTGGCTACAACATCACAAGTGTTGCTTGACATTGATGAAGAGGATAAAGAAGATGCTTTGTATAGACACAGTGAAAAGCTTGCAATAGCTTTTGCTCTTCTGAGTACACCCCCTGGAACACCAATTAGGATTGTGAAGAACTTGCGTGTTTGTGAAGATTGCCACTCTGCTACCAAGTTCATATCTAAGGTTTATAACAGAGAGATTGTGGTGAGGGACCGCAATCGCTTCCACCATTTCAAGAATGGTTCTTGCTCCTGCAGAGACTTCTGGTAA 1215 0.5391 MQLTKLSSTAATALTSVTTAAATTSFQVQLPPHTTKRRVAEQTCLALLSTCDTLTTLTRIHALILKLGLHHNPLVLTKFAFTSSTFNSVHYAASVVFPNDETTPHPVHDAFLFNTLIRAFAQTTHSKPHALRLYSTMLRRAVSPNKFTFPFVLKACAGIASLPLAETVHASVVKLGFDEDTHVRNTMVHMYCCCECKEGAGPVSAKKVFDESPEKDSVTWSAMIGGYARAGNSARAVTLFREMQVMGVCPDEITMVSVLSACADLGALELGKWLESYVERKNITKPVELCNALIDMLAKCGDEMGREIKRAGYVATTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPPGTPIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGSCSCRDFW 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1140 404 Gene3D Tetratricopeptide repeat domain 96 160 IPR011990 GO:0005515
Aed6g1140 404 TIGRFAM PPR: pentatricopeptide repeat domain 218 252 IPR002885 -
Aed6g1140 404 Pfam PPR repeat family 109 157 IPR002885 -
Aed6g1140 404 Pfam PPR repeat family 215 263 IPR002885 -
Aed6g1140 404 PANTHER - 308 390 - -
Aed6g1140 404 Pfam DYW family of nucleic acid deaminases 312 404 IPR032867 GO:0008270
Aed6g1140 404 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 109 144 IPR002885 -
Aed6g1140 404 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 308 390 - -
Aed6g1140 404 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 42 302 - -
Aed6g1140 404 Gene3D Tetratricopeptide repeat domain 161 337 IPR011990 GO:0005515
Aed6g1140 404 PANTHER - 42 302 - -
Aed6g1140 404 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1140 Aed-Chr6 16069481 16071452 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1140 207 404 Acyl Lipid Metabolism Gene Families AT1G47580 41.791 3.54e-42 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1140 - - gmx:100778415 478.018