Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1112 ATGCTCTCTCGCTCTCTTAAACCTCGTCAAATACACATACTCTCCTCGCTCCGTTCATTACCCTTTGTTACTCTCAACCTAAACCTAAACCTAAACCCGAACCTCACCCCTTCAATCCTCCCATCCCCACACCGTCCATTCTCCTCTACATGGCTATCCAAACCTGGAAACCCAGTCATCCAATGGCCCACACTGCCCCAAAACCGAATCACCCAACCCCCTCCGAACCCGAACCCCATACCCGAACCTCCCTCTCTCAACTCAAACGCTCTCTCCGTCATCTCCAGCCTCTTCGCCGACCCCTCCCTCTCGCCCGGCCCGGCTCTCCACGCCGAGCTCGACCGGGCCGGAATTGAACCGGACCCTCCCCTCCTGCTCGCCGTCTTCGACCGCTTCGGCTCGTCCCCCAAGCTGCTGCACTCGCTCTTCCTCTGGGCCCAGGCGACGCGGCCCGCGTTCAGGCCCGGCCCGAAACTCTTCGACGCAATGGTGAACGTGCTCGCGAAGGCGAGGGAGTTCGACGCTGCGTGGAAACTCGTTATCGATGAAGTCGAAGGGGAAAAAGAAGTAAGCTTGGTCTCCGTTGGGACCTTCGCTATCATGATTCGACGATATGCTCGTGCAGGTATGTCCAAACTTGCAATTAGAACATATGAGTTTGCTAGAGATAACAAGTCAATTGTGGATTCTGGATCAGAAATGAGTTTATTTGAGATATTGATGGATTCACTCTGTAAAGAAGGGTCTGTGAGGGAAGCTTCAGAGTATTTCCTATGGAAAAAGGAGTTGGACTTAAGCTGGGTTCCTTCTATTCGGGTTTACAACATAATGTTAAACGGATGGTTCCGATCTCGGAAACTGAAGCATGGCGAGAGACTCTGGGCGGAGATGAAGAAGGAGAATGTGAGACCAACTGTTGTGACATACGGCACCCTTGTGGAAGGATATTGCCGGATGCGCCGTGTCGAGAAGGCACTTGAAATGGTTGGTGACATGACCAAAGAAGGGATTGCACCAAATCCAATTGTGTATAACCCTATAATTGATGCACTGGCAGAAGCTGGAAGGTTCAAAGAGGCTTTGGGCATGTTGGAACGTTTTCAGGTTCTGGAAATTGGCCCTACCGATTCGACGTACAATTCTCTGATAAAGGGGTTTTGTAAGGCAGGTGATCTTGTTGGTGCTAGTAAGATTCTCAAAAGGATGATAAATAGGGGTTTTGTTCCAAGTTCCACCACCTATAACTACTTTTTCAGGTACTTTTCGAGATGTGGGAAAATCGACGAGGGGATGAACCTGTATACGAAGATGATTCAATCGGGTCATACGCCGGATAGGTTAACCTACCATCTTCTGGTGAAGATGCTATGTGAAGAGGAGAGGTTGGATTTGGCAGTTCAAGTTAGCAAGGAGATGAGAAATAATGGATACGACATGGATTTGGCAACGAGTACCATGTTGGTTCACTTGCTTTGCAGAATGCGTAGGTTGGAAGAGGCTTTTGCTGAATTTGAGGACATGATTCGAAGGGGTATAGTTCCTCAGTATCTCACTTTCCAGAGATTGAAAGCTGATTTGAAGAAACAAGGTATGGCTGAAATGGTGCAAAAACTTTGCAAGTTGATGTCTTCTGTTCCCTATAATCCGAACTTGCCAAATACTTATGGCGAAGACAGAGAACATGCGTATGCACGAAGAAAATCTATAATTAGGAAAGCGGAGGCGTTTTCTGATATGCTGAAGGACTGTAAGGACCGTAGCGAGCTTCGTAAGTATAGAAGAAGTTTGTCAGAAAATGCTGTCTCAAGCACAGACAGTTTGGTGGAGGATTCTGAGAGAGAAGGAAACACAAGATGA 1857 0.4814 MLSRSLKPRQIHILSSLRSLPFVTLNLNLNLNPNLTPSILPSPHRPFSSTWLSKPGNPVIQWPTLPQNRITQPPPNPNPIPEPPSLNSNALSVISSLFADPSLSPGPALHAELDRAGIEPDPPLLLAVFDRFGSSPKLLHSLFLWAQATRPAFRPGPKLFDAMVNVLAKAREFDAAWKLVIDEVEGEKEVSLVSVGTFAIMIRRYARAGMSKLAIRTYEFARDNKSIVDSGSEMSLFEILMDSLCKEGSVREASEYFLWKKELDLSWVPSIRVYNIMLNGWFRSRKLKHGERLWAEMKKENVRPTVVTYGTLVEGYCRMRRVEKALEMVGDMTKEGIAPNPIVYNPIIDALAEAGRFKEALGMLERFQVLEIGPTDSTYNSLIKGFCKAGDLVGASKILKRMINRGFVPSSTTYNYFFRYFSRCGKIDEGMNLYTKMIQSGHTPDRLTYHLLVKMLCEEERLDLAVQVSKEMRNNGYDMDLATSTMLVHLLCRMRRLEEAFAEFEDMIRRGIVPQYLTFQRLKADLKKQGMAEMVQKLCKLMSSVPYNPNLPNTYGEDREHAYARRKSIIRKAEAFSDMLKDCKDRSELRKYRRSLSENAVSSTDSLVEDSEREGNTR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1112 618 MobiDBLite consensus disorder prediction 68 84 - -
Aed6g1112 618 TIGRFAM PPR: pentatricopeptide repeat domain 485 514 IPR002885 -
Aed6g1112 618 TIGRFAM PPR: pentatricopeptide repeat domain 413 445 IPR002885 -
Aed6g1112 618 TIGRFAM PPR: pentatricopeptide repeat domain 448 480 IPR002885 -
Aed6g1112 618 TIGRFAM PPR: pentatricopeptide repeat domain 273 305 IPR002885 -
Aed6g1112 618 TIGRFAM PPR: pentatricopeptide repeat domain 307 340 IPR002885 -
Aed6g1112 618 TIGRFAM PPR: pentatricopeptide repeat domain 378 410 IPR002885 -
Aed6g1112 618 TIGRFAM PPR: pentatricopeptide repeat domain 342 375 IPR002885 -
Aed6g1112 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Aed6g1112 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Aed6g1112 618 PANTHER LEAF PROTEIN-LIKE 104 614 - -
Aed6g1112 618 Pfam PPR repeat 484 512 IPR002885 -
Aed6g1112 618 Pfam PPR repeat 239 257 IPR002885 -
Aed6g1112 618 Pfam PPR repeat 343 367 IPR002885 -
Aed6g1112 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Aed6g1112 618 Pfam PPR repeat family 269 318 IPR002885 -
Aed6g1112 618 Pfam PPR repeat family 377 419 IPR002885 -
Aed6g1112 618 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 104 614 - -
Aed6g1112 618 Gene3D Tetratricopeptide repeat domain 122 259 IPR011990 GO:0005515
Aed6g1112 618 Gene3D Tetratricopeptide repeat domain 474 546 IPR011990 GO:0005515
Aed6g1112 618 Gene3D Tetratricopeptide repeat domain 260 332 IPR011990 GO:0005515
Aed6g1112 618 Gene3D Tetratricopeptide repeat domain 404 473 IPR011990 GO:0005515
Aed6g1112 618 Gene3D Tetratricopeptide repeat domain 333 403 IPR011990 GO:0005515
Aed6g1112 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 479 IPR002885 -
Aed6g1112 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Aed6g1112 618 MobiDBLite consensus disorder prediction 594 618 - -
Aed6g1112 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Aed6g1112 618 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Aed6g1112 618 MobiDBLite consensus disorder prediction 66 85 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1112 91 553 Miscellaneous Gene Families AT4G11690 22.894 1.72e-42 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1112 - - gmx:100793484 1019.22