Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1053 ATGCTTCGAACTCACATTCACGTTTTCTATCCTTTCACTTCTCCACTTCACTCCGAGCAGCCACGTCATTCCTCGCGCGTCCATGCCTCTTCCGCGCCAACACGGCGTCGTTTGGTGAAAACCGCCGCTCCTCCTCCTCCTCCGGAACAGCCGAATCTCAGGCACCTCACTTCGCGCATTGTTCACCTCACTCGCCGGAAACAGCTCCGTCAGATTTTGGATGAGGTCGAGGTTGCGAAGAAGCATTTCGGGAAGCTGAACACGATTGTGATGAACGCGGTGATGGAGGCTTGCGTTCGATGCGGTGACATCGATTCGGCGCTGAGAATATTCAATGAGATGAAAAAGCGCGACGGTTGTGGCGTGGATACTGTCACCTATGCCACGCTTCTGAAGGGATTAGGTGAGGCACGAAGAGTCGATGAGGCTTTTGAATTGCTTGAAACTGTGGAAAATGGCACTGCCAGGGGAAGTCCTAACTTGTCAGCTCCATTGATCTTTGGTCTGCTAAATGCCTTAATCAAAACTGGAGACTTGCGTCGTGCAAATGGTCTCCTTGCCCGTTATGGTTTTGTGCTTCGTGAAGGTGGCAATTTTTCAGTCTCAGTATACAACATACTAATGAAGGGCTACATAAACTCAGGTTGTCCACACACTGCCATAGACATGCTCAATGAAATGTTACGTCAAGGCATAATGCCTGACCGGCTCACATATAACACACTAATTTTAGCATGTGTTGAGAGTGGAAAGTTGGATGCTGCAATGCAATTTTTTGAGGAAATGAAGGGCAAAGAACAGAAGTTTGTCAAAGATGATCTGTTTCCAGATATTGTTACATATACAACAATGCTTAAGGGTTTTGGGCAGGCGAAGGATCTTTCTTCAGTTCTGAAAATAGTGCTGGAAATGAAATCTCGTCGTGAATTATACATTGATAGAACTGCTTACACTGCAATAATTGATGCTTTTCTAAAATGTGGCTCAGTTAAGGGTGCTCTGTGTATTTTTGGAGAAATATCGAAGCAGGCTGGTCTGAATCCAGAGTTGAGGCCAAAGCCTCACCTCTATCTTTCCATGATGCGTGCCTTTGCTTCTCTAGGAGATTATGATCTAGTTAAAAAATTGCATAAACGGATTTGGCCAGATTCAGCAGGAACTATATTATTAGTTGCTCAAGAAGAAGCTGATCACCTTCTCATGGAAGCAGCACTGAATGCTGGTCAGGTTAGTGTTGCCATTAACACTCTTACTAAGATTGTTTCAAGATGGAAGGGCATATCCTGGACAAGTCGTGGGGGCATGGTTGCTTATCGTATTGAGGCCATGTTGGGATTCTCAAAGTCATTATTCAGTCCTCACTTACTTCCCCAGGTTTCACCTTCTGAACCAGTTGAGAATTATATGATACAATTTGAAGCAACACAGCCACTACAAGGTACCACAAAGCTGAGGGAAGTGGCTATGCGTTTTTTTGATGAAGCAGCTGTTCCTATTGTAGATGAGTGGGGCAGTTGTACAGGGCTGTTACATCGTGAAGACTGCAACCAGATGGATGCTCCAGTTTCCACAATGATGCGAAGCCCTCCTCCCATTGTTACAAGTTCAACATCTGTTGGTCATGTAGTTGATTTAATTCTAGAGAAGCGATACCCAATGGTTATTGTTGTAAATCACACAAACTCGTATTCTACTGCTCCATACAGCTCTAGAGCAGTTGGAGTTTTTACATCAGAACAATTGAGAAGGTTTATCACACCTGTATCTCAAGTAAAAGGGACAGACCTTTCAGTCTTCAAAAGGTAA 1806 0.4452 MLRTHIHVFYPFTSPLHSEQPRHSSRVHASSAPTRRRLVKTAAPPPPPEQPNLRHLTSRIVHLTRRKQLRQILDEVEVAKKHFGKLNTIVMNAVMEACVRCGDIDSALRIFNEMKKRDGCGVDTVTYATLLKGLGEARRVDEAFELLETVENGTARGSPNLSAPLIFGLLNALIKTGDLRRANGLLARYGFVLREGGNFSVSVYNILMKGYINSGCPHTAIDMLNEMLRQGIMPDRLTYNTLILACVESGKLDAAMQFFEEMKGKEQKFVKDDLFPDIVTYTTMLKGFGQAKDLSSVLKIVLEMKSRRELYIDRTAYTAIIDAFLKCGSVKGALCIFGEISKQAGLNPELRPKPHLYLSMMRAFASLGDYDLVKKLHKRIWPDSAGTILLVAQEEADHLLMEAALNAGQVSVAINTLTKIVSRWKGISWTSRGGMVAYRIEAMLGFSKSLFSPHLLPQVSPSEPVENYMIQFEATQPLQGTTKLREVAMRFFDEAAVPIVDEWGSCTGLLHREDCNQMDAPVSTMMRSPPPIVTSSTSVGHVVDLILEKRYPMVIVVNHTNSYSTAPYSSRAVGVFTSEQLRRFITPVSQVKGTDLSVFKR 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1053 601 Pfam PPR repeat 316 340 IPR002885 -
Aed6g1053 601 Pfam PPR repeat 357 379 IPR002885 -
Aed6g1053 601 Gene3D Tetratricopeptide repeat domain 271 444 IPR011990 GO:0005515
Aed6g1053 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 348 IPR002885 -
Aed6g1053 601 PANTHER OS09G0431600 PROTEIN 20 594 IPR044781 -
Aed6g1053 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Aed6g1053 601 TIGRFAM PPR: pentatricopeptide repeat domain 203 235 IPR002885 -
Aed6g1053 601 TIGRFAM PPR: pentatricopeptide repeat domain 279 307 IPR002885 -
Aed6g1053 601 TIGRFAM PPR: pentatricopeptide repeat domain 316 348 IPR002885 -
Aed6g1053 601 TIGRFAM PPR: pentatricopeptide repeat domain 91 123 IPR002885 -
Aed6g1053 601 TIGRFAM PPR: pentatricopeptide repeat domain 238 264 IPR002885 -
Aed6g1053 601 TIGRFAM PPR: pentatricopeptide repeat domain 125 148 IPR002885 -
Aed6g1053 601 Pfam Pentatricopeptide repeat domain 268 307 IPR002885 -
Aed6g1053 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 123 153 IPR002885 -
Aed6g1053 601 Pfam PPR repeat family 87 134 IPR002885 -
Aed6g1053 601 Pfam PPR repeat family 201 246 IPR002885 -
Aed6g1053 601 Pfam CBS domain 522 585 IPR000644 -
Aed6g1053 601 Gene3D - 478 583 IPR046342 -
Aed6g1053 601 ProSiteProfiles CBS domain profile. 525 596 IPR000644 -
Aed6g1053 601 Gene3D Tetratricopeptide repeat domain 167 270 IPR011990 GO:0005515
Aed6g1053 601 Gene3D Tetratricopeptide repeat domain 48 155 IPR011990 GO:0005515
Aed6g1053 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 307 IPR002885 -
Aed6g1053 601 CDD CBS_pair_SF 481 583 - -
Aed6g1053 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 269 IPR002885 -
Aed6g1053 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 87 117 IPR002885 -
Aed6g1053 601 MobiDBLite consensus disorder prediction 16 51 - -
Aed6g1053 601 SUPERFAMILY CBS-domain pair 464 585 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1053 Aed-Chr6 14996283 15002016 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1053 169 470 Miscellaneous Gene Families AT4G11690 25.081 2.53e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1053 - - gmx:100813146 1027.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1053 6 14996283 15002016 Aed6g1053 6 14996283 15002016 ECH