Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1013 ATGGGAAAACCTGACAATGATGTTACTGATTGTGGAACTAGAAGTAGAAAGCAATCAGGAAATAACAACATGAAGAAAGGGTTGTTTCAATCAGAAGCTTTCAAGGGGAATCATTTTGATGGCAAGAATCACGTGAATGAAATTACTAAGGTGACAAATTCGGGCACTCAACCCAGCTGCACTTTCTGCATAGGTAAAAATGGTTGCCGAATCGTACGCTCAAGAACAAAAGTAATGAATATTCTGATCAAGAGTGGAAAACCTCAGGAAGCAATAGTCATTTTTCAAAATCTGATTGAAGGAGGGCACCAACCGTCTTTAGCAACATATACAACCCTGTTAAACGCCTTAACCACTCAGAAGTATTTCAAGCCTATACATTCCATTGTCTCACTGGTTGAAGAAAAACAAATGAAGCCTGACTCAATATTTTTCAATGCTCTAGTAAATGCATTTGCTGAATCTGGGAACATGGAGGATGCCAAGAAAGTTGTTCAGAAAATGAAAGAAAGTGGATTGGAACCTTGTGCTTGCACTTACAACACATTGATAAAAGGTTACGGAATTGCAGGTAAGCCTGATGAATCAGTGAAGCTGCTAGATCTGATGTCAACAGAAGGGAATGTGAAACCAAATCTCAAGACATACAACATGCTTATCAGAGTTTTGTGTAAAATGAAGAACATGACCGAGGCATGGAATGTGGTGTATAAGATGTCTGCTTCTGGAATTCAACCAGATGCTGTTACCTTCAACACTATAGCAACCGATTATGCTCAGAATGGAAACACTGCTCAGGCTGAAGCAATGATTTTAGAGATGCAGAGGAATGGTTTGAAACCGAATGAGAGAACTTGCACCATCATCATGAGTGGATATTGTAGAGAGGGTAAAGTACAGGAAGCTCTAAGGTTTGTATACAGGATGAAGGATCTCGGGCTGCAGCCTAATCTTATTGCACTTAATTCCCTGGTTAATGGCTTTGTTGATATGATGGATCGAGATGGCGTCGATGAGGTGTTAAAGTTGATGGAAGAATTTCAGATCCGACCAGATGTGATAACATATAGTACTATAATGAATGCATGGAGCCAAGCCGGATTCTTGGAAAAATGCAAGGAAATCTATAATAACATGTTAAAATCTGGTGTAAAGCCGGATGTGCATGCTTATAGTATTCTTGCTAAAGGTTACATTCGAGCACAAGAAATGGAAAAGGCTGAAGAACTGCTAATCGTCATGACTGAATCAGGTGTCCCCCCAAATGTTGTTATATTCACAACTGTCATAAGTGGATGGTGCAGTGTTGGCAGAATGGACAATGCCATGAGGGTTTTCGACAAGATGGGTGAATTTGGGATTTCTCCAAATTTGAAGACATTCGAGACACTAATCTGGGGATACGCAGAAGCAAAACAGCCATGGAAAGCAGAAGGAATGCTCCAAATAATGGAAGAATTTCATGTTCAAGCGAAGAAATCAACTGTTGTGCTTGTCGCAGAAGCTTGGTGTTTTGCTGGATTGAAAGAAGGGGCAAAGACACTACTGAGTACTGTAAAAACTGAGAATATGACCACCAATTCAATAGACGAAGACAACAATATACCTGCTAAAAGTTCAGAGAAAATTTACCAAAAGCCACATACTAATGCTGCTCCTTTTTGTAGTCTCTTACAGATTCCATCTATTTCTTCCACTGACCAGAAAGGTTCAGCATTAACAACTAGAAGAAATAGAAGGCTCCTTAGAGATGGTGATTTGGAGACTCCATTGCTCACAACAAAGTTCAAGTGCCACTCTCAAATTTGTAGATATGGTGAAGGATTTTCCATTATGTGCAAACAGCTTCAAGGACAGCATTGTACATACCAACTTGCAAATTCATGTACAGCAGTATTCTTAAACTAA 1908 0.3957 MGKPDNDVTDCGTRSRKQSGNNNMKKGLFQSEAFKGNHFDGKNHVNEITKVTNSGTQPSCTFCIGKNGCRIVRSRTKVMNILIKSGKPQEAIVIFQNLIEGGHQPSLATYTTLLNALTTQKYFKPIHSIVSLVEEKQMKPDSIFFNALVNAFAESGNMEDAKKVVQKMKESGLEPCACTYNTLIKGYGIAGKPDESVKLLDLMSTEGNVKPNLKTYNMLIRVLCKMKNMTEAWNVVYKMSASGIQPDAVTFNTIATDYAQNGNTAQAEAMILEMQRNGLKPNERTCTIIMSGYCREGKVQEALRFVYRMKDLGLQPNLIALNSLVNGFVDMMDRDGVDEVLKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDVHAYSILAKGYIRAQEMEKAEELLIVMTESGVPPNVVIFTTVISGWCSVGRMDNAMRVFDKMGEFGISPNLKTFETLIWGYAEAKQPWKAEGMLQIMEEFHVQAKKSTVVLVAEAWCFAGLKEGAKTLLSTVKTENMTTNSIDEDNNIPAKSSEKIYQKPHTNAAPFCSLLQIPSISSTDQKGSALTTRRNRRLLRDGDLETPLLTTKFKCHSQICRYGEGFSIMCKQLQGQHCTYQLANSCTAVFLN 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1013 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Aed6g1013 635 TIGRFAM PPR: pentatricopeptide repeat domain 424 457 IPR002885 -
Aed6g1013 635 TIGRFAM PPR: pentatricopeptide repeat domain 354 388 IPR002885 -
Aed6g1013 635 TIGRFAM PPR: pentatricopeptide repeat domain 390 423 IPR002885 -
Aed6g1013 635 TIGRFAM PPR: pentatricopeptide repeat domain 285 317 IPR002885 -
Aed6g1013 635 TIGRFAM PPR: pentatricopeptide repeat domain 178 212 IPR002885 -
Aed6g1013 635 TIGRFAM PPR: pentatricopeptide repeat domain 215 248 IPR002885 -
Aed6g1013 635 TIGRFAM PPR: pentatricopeptide repeat domain 145 175 IPR002885 -
Aed6g1013 635 TIGRFAM PPR: pentatricopeptide repeat domain 249 283 IPR002885 -
Aed6g1013 635 MobiDBLite consensus disorder prediction 1 25 - -
Aed6g1013 635 PANTHER OS01G0228400 PROTEIN 1 635 - -
Aed6g1013 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Aed6g1013 635 Gene3D Tetratricopeptide repeat domain 70 205 IPR011990 GO:0005515
Aed6g1013 635 Gene3D Tetratricopeptide repeat domain 333 416 IPR011990 GO:0005515
Aed6g1013 635 Pfam PPR repeat family 421 469 IPR002885 -
Aed6g1013 635 Pfam PPR repeat family 351 399 IPR002885 -
Aed6g1013 635 Pfam PPR repeat family 246 294 IPR002885 -
Aed6g1013 635 Pfam PPR repeat family 175 225 IPR002885 -
Aed6g1013 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Aed6g1013 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Aed6g1013 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Aed6g1013 635 Pfam Pentatricopeptide repeat domain 94 152 IPR002885 -
Aed6g1013 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Aed6g1013 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Aed6g1013 635 Gene3D Tetratricopeptide repeat domain 417 531 IPR011990 GO:0005515
Aed6g1013 635 Gene3D Tetratricopeptide repeat domain 224 332 IPR011990 GO:0005515
Aed6g1013 635 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 635 - -
Aed6g1013 635 SUPERFAMILY HCP-like 84 313 - -
Aed6g1013 635 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1013 Aed-Chr6 14006198 14010265 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1013 69 559 Glycosyltransferase AT1G05670 25.202 8.61e-58 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1013 K17710 - gmx:100779093 1134.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1013 6 14006198 14010265 Aed6g1013 6 14006198 14010265 ECH