LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed6g0619	ATGTTGTCCACTTCAAAACTTGTTTCTTATAAATACACGTATACAATCTTGAGCAATTCCTACACACATCTTCAAAACCAAAAAAACATGGCTCTAACACTTCGTTGTTCTTCAACTTCTTTCATTAATCAGAAGGAAACCAACAAACTCCTCAAAACTTCTGATGATGTCCCTGCAACAGTTAGCTTTGCAAAACTCAAGCCATCGTTCCGTCTCCGGGCGAAAAGCTCCATGCAAGAAGCACATGAGACTCGTGATAATAGCAGCTTTCAGAAATGGGAGAAGGTGCTTGCTCCATCGGTTGCACACGGCCACGGTGGTGGTGATTCGAAGAGAGTGCCGGTGTATGTGATGCTGCCGCTGGACACGGTGACAATGGGTGGAAGCTTGAACAAGCCGAGGGCGATGAACGCGAGTCTGATGGCCCTGAAGAGTGCAGGGGTTGAAGGGGTTATGGTCGATGCTTGGTGGGGTTTGGTGGAGAAAGATGGGCCTTTGAAGTATAACTGGGAACCCTATGCTGAGCTTGTGCAGATGGTGCAAATGCATGGCTTGAAGCTTCAAGTTGTTATGTCCTTCCATCAGTGTGGGGGGAATGTTGGAGACAATTGCAGCATTCCTCTACCACCATGGGTGTTGGAAGAAATCAGCAAGAACCCCGACCTGGTTTACACAGACAGATCAGGGAGGAGGAATCCTGAGTACATCTCCTTAGGCTGTGATTCAGTTCCTGTTCTAAAAGGAAGGAGTCCCCTCCAAGTATATGCAGACTACATGAGAAGCTTTCGTGATAGATTCAATGATTACTTGGGCAGTGTTATCGTGGAAATACAAGTGGGGATGGGTCCTTGTGGAGAGCTAAGATATCCATCTTATCCAGAAACCAATGGAACTTGGAGGTTTCCAGGAATCGGAGAATTCCAATGTTATGACAAGTATATGAAAACGTCCTTAGCAGCTGCAGCTGAAGCTATTGGACAGAAAGAATGGGGAGGAGGTGGGCCCCATGACTCAGGCCAGTACAATCAATTTCCTGAGGATACTGGGTTTTTCAAAAGGGAAGGGACATGGAACACTGAATATGGACAGTTCTTTCTGGAATGGTACTCCGGCAAATTGCTGGAACACGGCGAGAGGATCGTCGTATCTGCTAAAGAAATATACCAAGCAACTGGTGTGAAGCTATCAGGGAAAGTTGCAGGAATCCATTGGCATTACAGAGCGAGGTCACACGCAGCTGAACTAACCGCCGGCTACTATAACACGCGAAATACCGACGGATATCTGCCTATAGCCAGAATGCTGGCAAAACACGGGGTCGTCTTCAATTTCACCTGCATGGAAATGAAGGACAGGGAGCAGCCTGACTTTGCTAACTGCTCGCCCGAAGGGTTAGTTCACCAGGTAAAGATGGCAACAACAACAGCTAGAACAGAACTTGCCGGGGAAAATGCACTAGAGAGATATGATGCAGATGCATATGCTCAAGTTTTATCAACAAGTAAGTCAGAATCTGGCAACAGACTGGCTGCATTCACGTATCTAAGAATGAACAAGAGGTTGTTCGAAGGCGATAACTGGCGGCACCTAGTGGATTTTGTAAGAAGCATGTCTGAGGGTGGTCGGAGAGTGAGACTTCCGGCAGCTGATTCCCATGGGAGTGATCTTTACGTTGGGCACATCAAATCAACAAAGGAGAAACAGCAGACACAAGAGGCTGCTCTTGTGTAA	1731	0.4697	MLSTSKLVSYKYTYTILSNSYTHLQNQKNMALTLRCSSTSFINQKETNKLLKTSDDVPATVSFAKLKPSFRLRAKSSMQEAHETRDNSSFQKWEKVLAPSVAHGHGGGDSKRVPVYVMLPLDTVTMGGSLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLKYNWEPYAELVQMVQMHGLKLQVVMSFHQCGGNVGDNCSIPLPPWVLEEISKNPDLVYTDRSGRRNPEYISLGCDSVPVLKGRSPLQVYADYMRSFRDRFNDYLGSVIVEIQVGMGPCGELRYPSYPETNGTWRFPGIGEFQCYDKYMKTSLAAAAEAIGQKEWGGGGPHDSGQYNQFPEDTGFFKREGTWNTEYGQFFLEWYSGKLLEHGERIVVSAKEIYQATGVKLSGKVAGIHWHYRARSHAAELTAGYYNTRNTDGYLPIARMLAKHGVVFNFTCMEMKDREQPDFANCSPEGLVHQVKMATTTARTELAGENALERYDADAYAQVLSTSKSESGNRLAAFTYLRMNKRLFEGDNWRHLVDFVRSMSEGGRRVRLPAADSHGSDLYVGHIKSTKEKQQTQEAALV	576

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed6g0619	576	PANTHER	BETA-AMYLASE	30	576	-	-
	Aed6g0619	576	Pfam	Glycosyl hydrolase family 14	116	533	IPR001554	GO:0000272\|GO:0016161
	Aed6g0619	576	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	168	186	IPR001554	GO:0000272\|GO:0016161
	Aed6g0619	576	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	282	304	IPR001554	GO:0000272\|GO:0016161
	Aed6g0619	576	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	357	376	IPR001554	GO:0000272\|GO:0016161
	Aed6g0619	576	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	410	421	IPR001554	GO:0000272\|GO:0016161
	Aed6g0619	576	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	428	451	IPR001554	GO:0000272\|GO:0016161
	Aed6g0619	576	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	147	161	IPR001554	GO:0000272\|GO:0016161
	Aed6g0619	576	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	465	487	IPR001554	GO:0000272\|GO:0016161
	Aed6g0619	576	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	393	409	IPR001554	GO:0000272\|GO:0016161
	Aed6g0619	576	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	190	211	IPR001554	GO:0000272\|GO:0016161
	Aed6g0619	576	ProSitePatterns	Beta-amylase active site 1.	194	202	IPR018238	GO:0000272\|GO:0016161
	Aed6g0619	576	Gene3D	Glycosidases	107	573	-	-
	Aed6g0619	576	PRINTS	Plant beta-amylase signature	272	281	IPR001371	GO:0000272\|GO:0016161
	Aed6g0619	576	PRINTS	Plant beta-amylase signature	431	441	IPR001371	GO:0000272\|GO:0016161
	Aed6g0619	576	PRINTS	Plant beta-amylase signature	513	527	IPR001371	GO:0000272\|GO:0016161
	Aed6g0619	576	PANTHER	-	30	576	IPR001554	GO:0000272\|GO:0016161
	Aed6g0619	576	SUPERFAMILY	(Trans)glycosidases	111	540	IPR017853	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed6g0619	Aed-Chr6	5259893	5263292	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed6g0619	30	576	Glycoside Hydrolase	AT4G17090	69.856	0.0	812

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed6g0619	K01177		-	gmx:100818063	1018.84

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed6g0619	6	5259893	5263292	Aed6g0619	6	5259893	5263292	ECH