Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0283 ATGAAGAGGAAGAGAAGTTTTTCCTTGCTCTTTTTCCTGTTCTTTTTGGTGATTGTTTTTTTCACCTTCTCTATGGTTTCTGTGGAAGCAAGGAAGAGTACTAACATCAAGAAAAAATTTCACAAACGTCACAAAGGTGGTCATAGCAGTAGCAATGACCACACTGGAGGATCACATTCTCCATGTCCAGTGCCAACCCCTCAAGATGGGAGCATCTTTGATGTTTTGTCTTTTGGTGCCAAGGGAAATGGAGTTTCTGATGATTCAGAGGCACTTCTAGCTGCGTGGAATGGTGCATGTAAAGTTGCTGGTGCTATAGTTAAAATTCCAGCACAACTCAAGTTCCTCATCAAACCTCTTACTTTACAAGGCCCTTGTATGCCTGACCTCACTCTTCAGATAGATGGAACTCTATTGGCACCTCCTGAAGCATCTTCATGGCCAAAATCCAGTTTGTTTCAGTGGATAAATTTCAAGTGGGTGCAGAACTTCACCATCAAAGGCTCTGGCACTGTTGATGGCCAAGGCTATAACTGGTGGAGTACTTCCTCAGAATTTTATGATATACAGAAGAAGAGCTACTCCAAACAAATTCCTGGCATGAAACCAACAGCTATAAGATTCTACTCCAGCAACTTTGTAACAGTTCATGATATCAGAATCATAAACAGTCCTTTGTGCCATCTAAAATTTGACAACTCAAAGGGGATCAGAGTTAACAACATTACAATATCCTCCCCTGAGAATAGCCCCAACACTGATGGCATTCACTTGCAAAACACACAGGACGTAGAAATTCAACGTTCTATCATTTCAACAGGAGATGACTGTGTATCCATCCAAACCGGTTGCTCTAATGTTCATGTCCACCATATTAATTGTGGCCCTGGACATGGTATAAGTTTGGGAGGATTAGGAAAAGACAAGAGTGTGGCATGTGTGTCAGACATCATTATTGAGGATATATCTATGAAAAACACTCTATATGGAGCAAGAATCAAAACATGGCAGGGAGGCATTGGTGTGGTTAAAAATGTGACATTTTCCAGAATTAAAGTCTATGATGTAATGTATCCAATAATGATAGACCAATACTATTGTGACAAGCAAATCTGCAAGAACCATACAAGCACAGTGGTGATTTCTGGGGTTAAGTATGATCAAATACATGGTACTTATGGTATGCAGCCTGTGCATCTAGCATGCAGCAACACCATACCATGCACAGATGTTGATTTAACTGATATTCAACTGAGTCCATCCCCTAAATATAGAGATAGAGGTTTGCAACAAGCTGTGTGTTGGAACTCTTACGGAAAATCACAAGGCCCTTTGATACCTTCAAGCATTGATTATTGCCTGAGAAGTGGTGGTGGAATAATCAAGAGGATAGCAAAGTCACATGATAATAGAGTCTGTTACTAA 1425 0.4042 MKRKRSFSLLFFLFFLVIVFFTFSMVSVEARKSTNIKKKFHKRHKGGHSSSNDHTGGSHSPCPVPTPQDGSIFDVLSFGAKGNGVSDDSEALLAAWNGACKVAGAIVKIPAQLKFLIKPLTLQGPCMPDLTLQIDGTLLAPPEASSWPKSSLFQWINFKWVQNFTIKGSGTVDGQGYNWWSTSSEFYDIQKKSYSKQIPGMKPTAIRFYSSNFVTVHDIRIINSPLCHLKFDNSKGIRVNNITISSPENSPNTDGIHLQNTQDVEIQRSIISTGDDCVSIQTGCSNVHVHHINCGPGHGISLGGLGKDKSVACVSDIIIEDISMKNTLYGARIKTWQGGIGVVKNVTFSRIKVYDVMYPIMIDQYYCDKQICKNHTSTVVISGVKYDQIHGTYGMQPVHLACSNTIPCTDVDLTDIQLSPSPKYRDRGLQQAVCWNSYGKSQGPLIPSSIDYCLRSGGGIIKRIAKSHDNRVCY 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0283 474 SUPERFAMILY Pectin lyase-like 63 450 IPR011050 -
Aed6g0283 474 MobiDBLite consensus disorder prediction 39 63 - -
Aed6g0283 474 PANTHER - 16 461 - -
Aed6g0283 474 Pfam Glycosyl hydrolases family 28 107 423 IPR000743 GO:0004650|GO:0005975
Aed6g0283 474 Gene3D - 60 452 IPR012334 -
Aed6g0283 474 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 16 461 - -
Aed6g0283 474 SMART pbh1 234 260 IPR006626 -
Aed6g0283 474 SMART pbh1 261 282 IPR006626 -
Aed6g0283 474 SMART pbh1 343 364 IPR006626 -
Aed6g0283 474 SMART pbh1 314 335 IPR006626 -
Aed6g0283 474 SMART pbh1 284 304 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0283 Aed-Chr6 2482042 2484749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0283 1 473 Glycoside Hydrolase AT3G26610 61.284 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0283 K01213 - gmx:100803027 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0283 6 2482042 2484749 Aed6g0283 6 2482042 2484749 ECH