Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0260 ATGAAGTTCATGAAACTAGGATCTCGTCCTGACACATTCTACACTTCAGAAGCAGTAAGGTCAGTCTCTTCTGAAGTTTCCAGCGACCTCATAATTCAAGTAAAGGGAAGTAGATATCTTCTGCACAAGTTTCCCTTGCTGTCAAAATGTTTGAGGCTACAAAAGTTATGTTCAGAGTCTCCTGATTCATCTTCACAGCACCAACTAGTCCAACTTCCCGATTTCCCAGGTGGGGTTGAAGCATTTGAGTTGTGTGCGAAGTTCTGCTATGGAATAACCATCACTCTGAGCCCTTACAACATTGTGGCTGCAAGATGTGGTGCCGAGTATCTTCAAATGACTGAGGAGGTTGAGAAGGGGAACCTGATTCAGAAGCTTGAGGTTTTCTTCAACTCATGCATTCTACGTGGCTGGAAAGATGCTATAGTGAGTCTTCAGACCACAAAAGCTTTGCCTATGTGGTCTGAGGACTTGGGAGTCACAAGCAGATGCATTGAAGCTGTTGCTGCAAAAGTGTTGAGTCACCCTTCTAAGGTGAGTTTGTCACATAGCCATTCAAGAAGGGTGAGGGATGATGTGTCTTGCAATGGTAACGAAAGTGCGAGACATAATAATAACAAGTCAGGAAACAAAGGATGGTGGGCTGAAGATTTGGCAGAACTTAGCATAGACCTGTATTGGAGAACCATGATAGCAATCAAATCTGGTGGCAAGATTCCCTCAAATCTCATTGGAGATGCATTGAAAATCTATACTTCTAGGTGGCTACCAAATATTACCAACAAGCATGGAGGGAATCTAAAGAAGCAATCTTTTGGTGACTCAGAATCTGAGTCAGTTGGTGAAATGGCTTCAAAGCATCGTCTGCTTTTGGAATCAGTAGTGAGCTTGCTTCCTGCTGAGAAAGGTGCTGTTTCTTGTGGCTTTCTTTTGAAGCTTCTGAAGGCATCCAATATTCTTAATGCTTCTTCATCTTCAAAGATGGAATTGGCAAGAAGGGTAGGGCTTCAATTGGAGGAAGCCACAGTGAGTGATCTTTTGATACCCTCACTTTCACTGTCTTACACAAATGACAGAGTGTATGATGTTGAGTTGGTGATGACCATATTGGAGCAGTTTATGTCACAAGGGCAGAGTCCTCCAACTAGTCCTGCAAGATCTAGGATGGCATGTGAAAGAAGAAGGTCTCGTTCAGCTGAGAATATTAACTTGGAGTTTCAAGAGAGTAGAAGGTCCTCTTCAGCATCTCATAGTTCTAAATTGAAAGTGGCAAAGCTTGTGGATAGGTATCTTCAAGAAGTTGCCAGGGATGTAAATTTTCAGTTGTCCAAATTCATTGCTCTTGCTGAGATTATACCAGATTTTGCAAGACATGATCATGATGATCTCTACAGGGCTATTGACATTTATCTCAAGCAAGCTCGAGCAGCACAAGCTAGTGGTGGCAAAGTGACTACTGATTTGCCAACAAACATCAAGGCATTACTCACAGCACATGGCATTGACCCATCAAAACCTACAGCACCATTAAGCACTACTACAAGTATACATGCTGAGGACAATTGGAGTGTTTCAAACTTCAAGTCACCAAAGTCAACAAGGTCTTCAACTCTGAGGATGAAGCTAGCTGAAGATGATCATGACTTCAATCAAAACGGTTTGACCCATCATGATGGGATTGGAAGGAATTCTAGATTTAAGGCCATTTGTGCTATTCCAACACAACCCAAAAAAATGCTTAGTAAGTTCTGGTCTACCAATAGAACTGCTAGTGCTACCACTGAAAAGAATTAA 1794 0.4214 MKFMKLGSRPDTFYTSEAVRSVSSEVSSDLIIQVKGSRYLLHKFPLLSKCLRLQKLCSESPDSSSQHQLVQLPDFPGGVEAFELCAKFCYGITITLSPYNIVAARCGAEYLQMTEEVEKGNLIQKLEVFFNSCILRGWKDAIVSLQTTKALPMWSEDLGVTSRCIEAVAAKVLSHPSKVSLSHSHSRRVRDDVSCNGNESARHNNNKSGNKGWWAEDLAELSIDLYWRTMIAIKSGGKIPSNLIGDALKIYTSRWLPNITNKHGGNLKKQSFGDSESESVGEMASKHRLLLESVVSLLPAEKGAVSCGFLLKLLKASNILNASSSSKMELARRVGLQLEEATVSDLLIPSLSLSYTNDRVYDVELVMTILEQFMSQGQSPPTSPARSRMACERRRSRSAENINLEFQESRRSSSASHSSKLKVAKLVDRYLQEVARDVNFQLSKFIALAEIIPDFARHDHDDLYRAIDIYLKQARAAQASGGKVTTDLPTNIKALLTAHGIDPSKPTAPLSTTTSIHAEDNWSVSNFKSPKSTRSSTLRMKLAEDDHDFNQNGLTHHDGIGRNSRFKAICAIPTQPKKMLSKFWSTNRTASATTEKN 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0260 597 PANTHER OS12G0117600 PROTEIN 1 473 IPR043454 -
Aed6g0260 597 PANTHER OS12G0117600 PROTEIN 473 594 IPR043454 -
Aed6g0260 597 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 1 473 - -
Aed6g0260 597 MobiDBLite consensus disorder prediction 182 207 - -
Aed6g0260 597 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 473 594 - -
Aed6g0260 597 Gene3D Potassium Channel Kv1.1; Chain A 14 123 IPR011333 -
Aed6g0260 597 SUPERFAMILY POZ domain 20 117 IPR011333 -
Aed6g0260 597 ProSiteProfiles NPH3 domain profile. 212 523 IPR027356 -
Aed6g0260 597 MobiDBLite consensus disorder prediction 376 396 - -
Aed6g0260 597 Pfam NPH3 family 213 474 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0260 Aed-Chr6 2287762 2291206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0260 26 473 EF-hand Containing Proteins AT3G44820 32.762 7.34e-67 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0260 - - gmx:100797361 986.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0260 6 2287762 2291206 Aed6g0260 6 2287762 2291206 ECH