Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed6g0225 | ATGCAAGACCCCATCGTCACCACCACCCCCGACACCGATCACCGCGAAACGACGACGCCGTCGTCGTTGAATCGCAGCAACAGCAACACGACAAACCGTTCCAATAAACGACCCGTCTTCAAGGTCCTCCCGGGGCAGATCGCGTTCCGCCTTGTGTGCCACGCCTCCATCGTCGGCGGCCTCATCGGGAGCTCCGGCTCCATCGTGTCGCAGCTCCGCCGCGAGACCGGCTGCAAAATCCACTGCGAGGACTCTCTCTCCTCCGCCGAGGACCGTGTTATCCTCGTAATCGGCTCCATCTCGCCGCGGAAGTGCCTCCAGCTCGGCGGCGACGGCGGCGAGGTCGAGGTCTCCAGCGCGCAGGAAGCCGTCGTTAGGGTTTTCGAGAGGGTTTGGGACCTGGAAGCTGAAAAAAACATTATTTCTAACAGAGCCGTTAACGGCGAGGTTTTTTCGAAGTTGCTAGCACACACTTCGCAGATTGGTGCTGTTGTTGGCAAAGGAGGGAAGAACATAACCGCCATTAGGAACAGTAGTGGTGCCAAAATTAGGGTTTGCCCTCCTCCGCAATGCGCCACTAAAGACGAAGAGTTAGTTCAAATAACTGGTGGAATTTTGGCTGTAAAGAAAGCGCTGATTTCTGTATCTCATTGTCTTCAAGATTGTCCGCCATTATGCAAAGTTCCAGTTTCTTCTAGTACACCAACTGTTAGCTCTTCTGATAGGTCGTCCTCTGATCCAAATGCTGAACTTTTTCCTCACCTTAATTCCTTGTTAACCACCATGGAAGGTTTATCTATATATGAACGGACCACAAACTCTAACGAAACCTCTAACCGTGACTCAAAAGGTGCAGAACACAAAGTTGTGTTCAGACTCCTTTGCTCTAACAATGTAGCTGGGAGCGTGATTGGTAAAAGAGGGGCTATAGTCAGAGCTCTGGAAAGTAAAACAGGTGCTTCTATTATCTTTGCAGCTCCTTTAAGCGAATTTGCTGAGCGCATTGTCACCATTTCTGCTGTAGAGAGCCTTGAATCTGGTAACTCTCCTGCACAAGATGCTGTGATTCTTGTCTTTGCTAGAATTATTGAAGATCACATTGGAAAGGGTTTTCTCCCAGTCTCTAGTTTGGAATCCCCTGTAACTGCAAGACTTTTAGTTGCAACAAGCACAGTAAATTGCTTGAGTGGCAATGAAGGTCAGGTGATTTCAGAATTGAGAGAAGTAACTGGGGCTGATATACAAATGTTGCATGGAGAGCCAGTTCCTAATGGTGCTTCAGATGATGATGTGGTGGTGCAGAGAGATTTCGTGCAGATCACAGGAGAGTACAAATGTGTACAAAATGCCCTATATAAAATCACTTCTAGAATCAGGGATAATCTCTTGTCCAATGAGGTGGTTGCTGAAGCAAGACCGAAATCCAAATGGAAAGTGAATAAGGATCCTGTAAAGGGTAAACCTTTTGCCCGTGGAAAATCTGCTTTTCCTTCTGGGAGGTTTCTGCCACGGAATGCAGGGGTGCATGCTGAAACAATATTACAAAATGGAGAATTACATTCGGATTTAAGTGAGAATTTGGAACGTGGGAGAGGAAACATGTTTGCTACGGTGACAAATACTACTGTGGAGATTATAGTTTCTGAGCACGTCTTTGGTTCTGTTTATGGTGAAGACGGTGGCAATCTGGATCGAATCAGACAGATTTCAGGTGCAACTGTTACGGTTTATGATCCTTCCGTTGGCACAAGTGGAGGGAAAGTTGTCATATCTGGGACACCTGATCAAACCTTTGCAGCGCAGAGCTTGCTTCAAGCCTTTATTTAA | 1827 | 0.474 | MQDPIVTTTPDTDHRETTTPSSLNRSNSNTTNRSNKRPVFKVLPGQIAFRLVCHASIVGGLIGSSGSIVSQLRRETGCKIHCEDSLSSAEDRVILVIGSISPRKCLQLGGDGGEVEVSSAQEAVVRVFERVWDLEAEKNIISNRAVNGEVFSKLLAHTSQIGAVVGKGGKNITAIRNSSGAKIRVCPPPQCATKDEELVQITGGILAVKKALISVSHCLQDCPPLCKVPVSSSTPTVSSSDRSSSDPNAELFPHLNSLLTTMEGLSIYERTTNSNETSNRDSKGAEHKVVFRLLCSNNVAGSVIGKRGAIVRALESKTGASIIFAAPLSEFAERIVTISAVESLESGNSPAQDAVILVFARIIEDHIGKGFLPVSSLESPVTARLLVATSTVNCLSGNEGQVISELREVTGADIQMLHGEPVPNGASDDDVVVQRDFVQITGEYKCVQNALYKITSRIRDNLLSNEVVAEARPKSKWKVNKDPVKGKPFARGKSAFPSGRFLPRNAGVHAETILQNGELHSDLSENLERGRGNMFATVTNTTVEIIVSEHVFGSVYGEDGGNLDRIRQISGATVTVYDPSVGTSGGKVVISGTPDQTFAAQSLLQAFI | 608 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed6g0225 | 608 | CDD | PCBP_like_KH | 153 | 216 | - | - | |
| Aed6g0225 | 608 | ProSiteProfiles | Type-1 KH domain profile. | 149 | 215 | - | - | |
| Aed6g0225 | 608 | ProSiteProfiles | Type-1 KH domain profile. | 288 | 355 | - | - | |
| Aed6g0225 | 608 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 39 | 101 | IPR036612 | GO:0003723 | |
| Aed6g0225 | 608 | Gene3D | K Homology domain, type 1 | 147 | 223 | IPR036612 | GO:0003723 | |
| Aed6g0225 | 608 | Gene3D | K Homology domain, type 1 | 377 | 461 | IPR036612 | GO:0003723 | |
| Aed6g0225 | 608 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
| Aed6g0225 | 608 | ProSiteProfiles | Type-1 KH domain profile. | 46 | 124 | - | - | |
| Aed6g0225 | 608 | CDD | KH-I | 542 | 605 | - | - | |
| Aed6g0225 | 608 | Gene3D | K Homology domain, type 1 | 537 | 608 | IPR036612 | GO:0003723 | |
| Aed6g0225 | 608 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 374 | 462 | IPR036612 | GO:0003723 | |
| Aed6g0225 | 608 | SMART | kh_6 | 148 | 220 | IPR004087 | GO:0003676 | |
| Aed6g0225 | 608 | SMART | kh_6 | 379 | 459 | IPR004087 | GO:0003676 | |
| Aed6g0225 | 608 | SMART | kh_6 | 287 | 363 | IPR004087 | GO:0003676 | |
| Aed6g0225 | 608 | SMART | kh_6 | 539 | 608 | IPR004087 | GO:0003676 | |
| Aed6g0225 | 608 | SMART | kh_6 | 45 | 129 | IPR004087 | GO:0003676 | |
| Aed6g0225 | 608 | PANTHER | RNA-BINDING KH DOMAIN-CONTAINING PROTEIN | 30 | 489 | - | - | |
| Aed6g0225 | 608 | CDD | PCBP_like_KH | 290 | 359 | - | - | |
| Aed6g0225 | 608 | PANTHER | KH DOMAIN CONTAINING RNA BINDING PROTEIN | 30 | 489 | - | - | |
| Aed6g0225 | 608 | CDD | PCBP_like_KH | 49 | 106 | - | - | |
| Aed6g0225 | 608 | Gene3D | K Homology domain, type 1 | 46 | 132 | IPR036612 | GO:0003723 | |
| Aed6g0225 | 608 | Gene3D | K Homology domain, type 1 | 286 | 365 | IPR036612 | GO:0003723 | |
| Aed6g0225 | 608 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 540 | 607 | IPR036612 | GO:0003723 | |
| Aed6g0225 | 608 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 283 | 340 | IPR036612 | GO:0003723 | |
| Aed6g0225 | 608 | ProSiteProfiles | Type-1 KH domain profile. | 540 | 604 | - | - | |
| Aed6g0225 | 608 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 148 | 223 | IPR036612 | GO:0003723 | |
| Aed6g0225 | 608 | Pfam | KH domain | 50 | 101 | IPR004088 | GO:0003723 | |
| Aed6g0225 | 608 | Pfam | KH domain | 291 | 340 | IPR004088 | GO:0003723 | |
| Aed6g0225 | 608 | Pfam | KH domain | 154 | 212 | IPR004088 | GO:0003723 | |
| Aed6g0225 | 608 | Pfam | KH domain | 382 | 455 | IPR004088 | GO:0003723 | |
| Aed6g0225 | 608 | Pfam | KH domain | 542 | 605 | IPR004088 | GO:0003723 | |
| Aed6g0225 | 608 | ProSiteProfiles | Type-1 KH domain profile. | 380 | 454 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed6g0225 | Aed-Chr6 | 1974532 | 1980600 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed6g0225 | K21444 | - | gmx:100793130 | 1014.6 |
Event-related genes