Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2645 ATGTCCGAGATGGGTGATGATGCATTTGATGAAGAGTGTGATTATCTCTTCAAGGCAGTTCTGATCGGAGACTCTGGAGTTGGGAAATCAAATCTGCTGTCGAGGTTTGCAAAAGATGAATTCCGGTTGGATTCAAAACCCACAATAGGAGTAGAATTTGCTTACCGGAACATCAAGGTTCGAGACAAACTCATCAAAGCCCAAATATGGGACACTGCCGGCCAAGAAAGGTTTAGAGCAATCACAAGTTCTTACTATAGAGGAGCCTTAGGGGCAATGCTAGTGTATGACATAACGATGAGATCAAGTTATGAGAGTGTGAGCAAATGGCTAGTGGAGCTGAGGGAGTTTGGAGGAGAAGACATGGTGGTTGTTCTGGTTGGAAACAAATGTGATCTGGACGAATCAAGACAAGTTCAGAAAGAAGAAGGAAAAGTGTTTGCGGAAACAGAGGGTATATGTTTCATGGAAACCTCTGCTTTGAAGAATCTCAATGTTGACCAAGTCTTCTTACAAATGATCACAAGGATTTATGACATCACAAGCCACAAATTTTTGGCAGCCAAAATGGACGGGAAGTCTATTAATCTTTTCAATGGAAAGGAGATCCATATAGCCGATCAAGTCACTGCAACTAAACAACCTACTAATTGCTGTTCTATATAG 666 0.4159 MSEMGDDAFDEECDYLFKAVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYRNIKVRDKLIKAQIWDTAGQERFRAITSSYYRGALGAMLVYDITMRSSYESVSKWLVELREFGGEDMVVVLVGNKCDLDESRQVQKEEGKVFAETEGICFMETSALKNLNVDQVFLQMITRIYDITSHKFLAAKMDGKSINLFNGKEIHIADQVTATKQPTNCCSI 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2645 221 ProSiteProfiles small GTPase Rho family profile. 10 178 - -
Aed5g2645 221 Pfam Ras family 18 178 IPR001806 GO:0003924|GO:0005525
Aed5g2645 221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 193 IPR027417 -
Aed5g2645 221 SMART rab_sub_5 17 180 - -
Aed5g2645 221 Gene3D - 9 219 IPR027417 -
Aed5g2645 221 ProSiteProfiles small GTPase Rab1 family profile. 12 219 - -
Aed5g2645 221 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 7 220 - -
Aed5g2645 221 TIGRFAM small_GTP: small GTP-binding protein domain 16 170 IPR005225 GO:0005525
Aed5g2645 221 PANTHER DRAB5-RELATED 7 220 - -
Aed5g2645 221 SMART ran_sub_2 22 218 - -
Aed5g2645 221 CDD Rab11_like 14 178 - -
Aed5g2645 221 SMART ras_sub_4 14 180 - -
Aed5g2645 221 ProSiteProfiles small GTPase Ras family profile. 11 221 IPR001806 GO:0003924|GO:0005525
Aed5g2645 221 PRINTS Transforming protein P21 ras signature 40 56 - -
Aed5g2645 221 PRINTS Transforming protein P21 ras signature 17 38 - -
Aed5g2645 221 PRINTS Transforming protein P21 ras signature 155 177 - -
Aed5g2645 221 PRINTS Transforming protein P21 ras signature 58 80 - -
Aed5g2645 221 PRINTS Transforming protein P21 ras signature 120 133 - -
Aed5g2645 221 SMART rho_sub_3 19 180 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2645 Aed-Chr5 27052556 27061174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2645 18 170 EF-hand Containing Proteins AT5G27540 30.303 1.98e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2645 - K07976 gmx:100781746 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2645 5 27052556 27061174 Aed5g2645 5 27052556 27061174 ECH