Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2622 ATGCCTATGGCGTATTCCGGCATATTTCAGGGCTTCATCAGATTGAAAGCCATTTCACGGCTTCGTTGCACTCCTCTCAGACCTTCTCTTTCCACCACTCCTTTTCACCGCACCGCCATTCGCCTCCGCCATCACTCCGCTCTTCATTCCGTCAAGGACACGCGTCACAGGACTATCAAGTTGCCGTTTTGGCACCAACGCAGCTCCAGCTACGGTCGTTTTGCCTACCAGGACCTTTCTAGTGACGACTCCGATGTCGAATCCGCTTCTTCCCCCTCTCACAATCAACAACTGGGTGAGTCAACTCATGAGAACATCGACGAGTGGAGATGGAAGCTCACCATGCTTATGCGCAACAAAGACGAACAAGAAGTCGTGTCCAGGGAAAAGAAGGACCGTCGCGATTTCGAGCAACTTTCAACTATAGCTTCCAGGATGGGTTTATATAGCCGACAATATGCAAGAGTTGTTGTGTTCAGCAAGGTGCCTTTGCCAAATTACCGCCCTGATTTGGATGATAAGCGTCCGCAAAGAGAGGTAATCTTACCACTTGGTGTTCATAAAGAAGTAGATGCTCATCTCCTTGCCCATCTTTCACAAAAGGCTAGAAACAAGTGGGGTTCTTTGGCTGATTCCTTGCATAAATCAAGTGATGCTAGAAGCATTCCAGTCAATGAAGGAATGTATGAACAGCCAGAGCCCATGACCCATAATAGTGTTGTCAAGGAGAAAATCCTTCAACGGAGAAGTTTGCAACTGCGTCATCGGCAACAGGATTGGCAGGAGTCTCCTGAAGGGCAAAAGATGCTTGAGTTTCGTAGAACTCTTCCTGCTTTCAAAGAGAAGGATGCATTTCTGAGAGTTATTTCACAGAATCAGGTCGTTGTTGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAACTTCCTCAATATATATTAGAATCTGAGACAGAAGCTGCACGTGGAGCTGTATGCAACATAATTTGTACTCAGCCTAGAAGAATATCTGCTATGTCTGTTTCTGAAAGAGTTGCAGCAGAATGTGGGGAGAAATTGGGAGAATCTGTTGGATACAAAGTTCGCTTGGAGGGTATGAAAGGGAGAGATACTCGTCTTCTTTTTTGCACCACAGGTGTATTGTTGCGGAGACTGCTTGTGGATAGGAGTTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGATTTTCTTCTCATTGTCCTAAAGGAACTTCTCCCTCGTCGCCCTGATTTGAGGTTGATTTTGATGAGCGCAACCTTAAATGCTGAGCTTTTTTCTTCATACTTCAATGGTGCTCCAACTATGCATATTCCTGGTTTTACATTTCCAGTTCGAGCACATTTTCTTGAGGATATTCTGGAAAGGACTGGATATCGGTTGACACCTTATAATCAAATTGATGACTATGGTCAAGATAAAACATGGAAAATGCAGAAGCAAGCTGAAGCTTTCAGAAAAAGAAAGAGCCAGATTGCTTCTACTGTTGAGGATGCTTTAGAAGTTGCAGACTTTAAGGGGTATAGCCTACGCATTCGAGATTCATTGTCCTGCTGGTGCCCTGACTCAATTGGTTTTAACCTTATTGAACATGTGCTTTGCCACATTGTTAAGAATGAAAGGCCAGGTGCTGTTTTGGTTTTTATGACTGGTTGGGATGATATAAACTCTTTGAAGGGTCAACTTCAAGCTCATCCTTTGTTGGGTGATCAGAGCCAAGTATTGCTTCTTGCATGCCACGGCTCCATGGCCAGCTCTGAGCAGAAGTTGATATTTGAAAATCCTGAAGGAGGGGTGAGGAAAATTGTTCTAGCAACTAACATGGCTGAGACTAGTATTACCATCAATGATGTTGTCTTTGTGGTTGACTCTGGAAAAGCAAAAGAAACATCATATGATGCATTAAATAACACACCTTGTTTGCTTCCTTCTTGGATCTCAAAAGCTGCTGCCCGGCAGAGAAGAGGAAGGGCTGGTCGTGTTCAGCCTGGTGAATGCTACCATCTTTATCCCAGATGTGTTTATGATACTTTTGCTGATTATCAATTGCCAGAGCTTTTGAGAACACCTTTGCAGTCCTTATGTCTGCAAATCAAAACTCTGCAACTTGGAAGCATCTCTGAGTTTTTATCTAGCGCTCTACAGCCTCCAGAGCCTCTATCGGTTCAAAATGCTATTGAATATTTGAAGATTATTGGGGCGTTAGATGAGAATGAAAATTTAACAGTTTTAGGGCACAAGTTGGCAATGCTTCCTGTGGAGCCCAAACTTGGCAAGATGCTCATTTTGGGAGCTATCTTCAAGTGTTTGGATCCTATAATGACTGTTGTTGCTGGTCTTAGTGTAAGAGATCCATTTGTGATGCCGTCAGACAAGAAGGATCTTGCAGAGTCTGCCAAAGCTCAACTTGCGGCTCGTGGCTATAGTGATCATCTTGCTCTTATCCGGGCTTATGAGGGTTGGAGAGATGCCGAAGCACATCAAGCTGGTCATGAGTACTGTTGGCGAAATTTTCTTTCTTCTCAAACACTTAAAGCCATTGACTCTCTTCGAAAGCAATTTTTTTACTTGCTCAAAGATATTGGTCTGGTCAATAACAATTCTGAAACCTACAATACATGGAGTCATGAAGAGCATCTACTCCGAGCAGTCATCTGTGCGGGTTTGTTTCCCGGGATATCCTCTGTTGTGAACAAAGGTAAGTCAATAGCACTGAAAACAATGGAGGATGGCCAGGTTCTTTTATATGCTAGCTCTGTAAATGGTAGTGTACACCGAATTCCATACCCCTGGTTAGTGTTCAATGAAAAGGTGAAAGTGAATTCAGTATTCCTTAGGGATTCAACTGCTATATCTGATTCAGTGCTTCTCTTATTTGGTGGGAATGTATCAAGAGGTGGACTAGATGGCCACCTGAAAATGTTGGGAGGGTATTTGGAGTTTTTCATGAAACCAGAATTAGCCAAAACTTACTTAAGTCTAAAGATGGAACTGGAAGAACTGATACAGAAAAAACTTTTGGATCCCATGTTGGAAACACAATTGCATAGTGAGCTTCTTTCAGCTGTTAGATTGTTGGTATCAGAGGACCATTGTGATGGGAGATTTGTTTTTGGTCGCCAGGGCCTACCACAATTAAAGAAGGAAACAAACTCCAAAAGTGGTGGTGGAGCTGAGGGTAAAAATTATAAAAATCATCTTCAAGCATTCCTTAACAGGGCTGGACATGATTCACCAACTTACAAAACAAAGGAGCTGAGAAACGACCAATTCCGTTCTACTGTCATATTCAATGGGTTGAATTTTGTTGGTCAGCCATGCAGCAGCAAAAAAGTAGCAGAAAAATCTGCGGCTGCTGAGGCTCTTCTATGGTTAAAAGGGGATAGCCATTCATCTGATGATATTGACCATGCATCAGTGCTTTTGAAAAAGAGCAACAAGAAAAGTAGGAAAAATTCGTTTAGTGGTGCTAAATGGAGTTGA 3525 0.4281 MPMAYSGIFQGFIRLKAISRLRCTPLRPSLSTTPFHRTAIRLRHHSALHSVKDTRHRTIKLPFWHQRSSSYGRFAYQDLSSDDSDVESASSPSHNQQLGESTHENIDEWRWKLTMLMRNKDEQEVVSREKKDRRDFEQLSTIASRMGLYSRQYARVVVFSKVPLPNYRPDLDDKRPQREVILPLGVHKEVDAHLLAHLSQKARNKWGSLADSLHKSSDARSIPVNEGMYEQPEPMTHNSVVKEKILQRRSLQLRHRQQDWQESPEGQKMLEFRRTLPAFKEKDAFLRVISQNQVVVVSGETGCGKTTQLPQYILESETEAARGAVCNIICTQPRRISAMSVSERVAAECGEKLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRSLKGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPDLRLILMSATLNAELFSSYFNGAPTMHIPGFTFPVRAHFLEDILERTGYRLTPYNQIDDYGQDKTWKMQKQAEAFRKRKSQIASTVEDALEVADFKGYSLRIRDSLSCWCPDSIGFNLIEHVLCHIVKNERPGAVLVFMTGWDDINSLKGQLQAHPLLGDQSQVLLLACHGSMASSEQKLIFENPEGGVRKIVLATNMAETSITINDVVFVVDSGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDTFADYQLPELLRTPLQSLCLQIKTLQLGSISEFLSSALQPPEPLSVQNAIEYLKIIGALDENENLTVLGHKLAMLPVEPKLGKMLILGAIFKCLDPIMTVVAGLSVRDPFVMPSDKKDLAESAKAQLAARGYSDHLALIRAYEGWRDAEAHQAGHEYCWRNFLSSQTLKAIDSLRKQFFYLLKDIGLVNNNSETYNTWSHEEHLLRAVICAGLFPGISSVVNKGKSIALKTMEDGQVLLYASSVNGSVHRIPYPWLVFNEKVKVNSVFLRDSTAISDSVLLLFGGNVSRGGLDGHLKMLGGYLEFFMKPELAKTYLSLKMELEELIQKKLLDPMLETQLHSELLSAVRLLVSEDHCDGRFVFGRQGLPQLKKETNSKSGGGAEGKNYKNHLQAFLNRAGHDSPTYKTKELRNDQFRSTVIFNGLNFVGQPCSSKKVAEKSAAAEALLWLKGDSHSSDDIDHASVLLKKSNKKSRKNSFSGAKWS 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2622 1174 PANTHER ATP-DEPENDENT RNA HELICASE 62 1073 - -
Aed5g2622 1174 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 895 977 IPR011709 -
Aed5g2622 1174 CDD SF2_C_RHA 533 684 - -
Aed5g2622 1174 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1076 1141 IPR014720 -
Aed5g2622 1174 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 542 716 IPR001650 -
Aed5g2622 1174 SMART helicmild6 570 676 IPR001650 -
Aed5g2622 1174 MobiDBLite consensus disorder prediction 82 102 - -
Aed5g2622 1174 Pfam Double-stranded RNA binding motif 1077 1139 IPR014720 -
Aed5g2622 1174 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 281 876 IPR027417 -
Aed5g2622 1174 Pfam DEAD/DEAH box helicase 286 437 IPR011545 GO:0003676|GO:0005524
Aed5g2622 1174 Pfam Helicase associated domain (HA2) 739 814 IPR007502 GO:0004386
Aed5g2622 1174 Gene3D - 1060 1144 - -
Aed5g2622 1174 Gene3D - 718 821 - -
Aed5g2622 1174 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 286 453 IPR014001 -
Aed5g2622 1174 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 62 1073 - -
Aed5g2622 1174 SMART ultradead3 274 467 IPR014001 -
Aed5g2622 1174 MobiDBLite consensus disorder prediction 82 100 - -
Aed5g2622 1174 SUPERFAMILY dsRNA-binding domain-like 1074 1145 - -
Aed5g2622 1174 Gene3D - 539 694 IPR027417 -
Aed5g2622 1174 SMART ha2_5 738 829 IPR007502 GO:0004386
Aed5g2622 1174 Pfam Helicase conserved C-terminal domain 544 675 IPR001650 -
Aed5g2622 1174 CDD DEXHc_RHA-like 292 452 - -
Aed5g2622 1174 MobiDBLite consensus disorder prediction 1154 1174 - -
Aed5g2622 1174 Gene3D - 228 454 IPR027417 -
Aed5g2622 1174 SMART DRBM_3 1077 1140 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2622 Aed-Chr5 26902815 26911889 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2622 K14442 - gmx:100791006 2148.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2622 5 26902815 26911889 Aed5g2622 5 26902815 26911889 ECH