Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2553 ATGATGTGTTCTTCGGAGACCATCAACATCGCTGCGAGTACACAGAAACTTGGTGTTGATAATCGAATTGCTCTCCGCTTCTACTACAGAATCGCCGATAATATCCTCAAGCAGGCTGATATCTTTCGTGCAGAGAAGAATATTGTTGATCTATATATCATGCTCCTAAGATTTTCTAGTTTGGTCTCTGAGACAATACCTCGTCACCGAGATTATAGATCATCTCCACAAGGCAAGAAAGAAGCTTTGAGAAAGAAATTGTTACATTCGGTGATTGAGCTAGAGAAATTGAAACCGAAGGTGCAACAGAAGATCAATGAGTTTAACAGCAGGCGAGCATACCACCACAATGGGTTAGAAAAATGTCATTCAAATAATTTGATAGATTTTTCTCCAGTGAAAAAGCAAACTTTGGCTTATGATCAAATAAAGGCAGTCATACCAACCACTGGAGAGTTTGTTTACCAAGGATCAAGAGCCCAGCAGTTTTCTAGTGTAAGGCCCGTGGACGAGAATATGAGGAGGCTATCTCTAAGTCTCCCACGTCCCAAGGAGGAAACTCTCTCCAGACATTCTATTCTAGGTCCCAATGGGCTGAAAGGGCAGTGGCGACCACCTGCAAGTGATAAAGGGGTCAGGTATCCAATCATCATAGACCTGTCTCCAGTTGAAATTCCAAGCCTTCAACAACCCTTGGAAGATGGATCTCTGAATAAAAAAGATAATAGCATTTCAGAACAACATATATCAGATTTAGAATCAATTCTTACCCAGAGTGATGACTGCAAGGCAAAGCATGCTGATGAAGCTCCTTCTCTTATCTCTTTTGAAGCAGCAGAAATCCCTGCTCAAATAGAAATTATCAGACAGCCTTCTCCTCCACCTGTACTTGCTGAAGTACAAGATTTGGTTCCTGTAGTGTCACCTCATGTTAATGAGGAAGGATGCAAGACAGAGATTCCAACACCAGATAGTATTGTTCGTGCTGAGTCTCCACTGCAACTACACATTTCAACTTCTATGATGGAGAGTTTTATGAAGCTTGCCAAGTCAAACACTGACAAAAATTTAGAGACTTGTGGAATCCTTGCTGGTTTGCTTAAAAACAGAAAATTTTATATTACCGCTCTAATAATCCCAAAGCAGGAGGCAACATCCAGTTCTCAGTGTCAAGCTACAAATGAAGAGGAGATATTTGAAGTACAGGATAAACAATCTCTTTTCCCCCTTGGTTGGATCCACATTATGCTGCCAGAAGCTGTTGCAATAGTTATGGCACCAACAGATAGTTCAAGACGGCACGGCATTTTTCGGTTGACAAGCCCTGGTGGAATGTCGGTCATTAGACAATGCCAGCAACGTGGCTTTCATTCACATAATCAACCTCCAGATGGTGGCCCCATTTACGATACATGTACAGATGTCTACATGAACCCAGATTTAAAATTTAATGTCATTGATCTTCGATGA 1470 0.4143 MMCSSETINIAASTQKLGVDNRIALRFYYRIADNILKQADIFRAEKNIVDLYIMLLRFSSLVSETIPRHRDYRSSPQGKKEALRKKLLHSVIELEKLKPKVQQKINEFNSRRAYHHNGLEKCHSNNLIDFSPVKKQTLAYDQIKAVIPTTGEFVYQGSRAQQFSSVRPVDENMRRLSLSLPRPKEETLSRHSILGPNGLKGQWRPPASDKGVRYPIIIDLSPVEIPSLQQPLEDGSLNKKDNSISEQHISDLESILTQSDDCKAKHADEAPSLISFEAAEIPAQIEIIRQPSPPPVLAEVQDLVPVVSPHVNEEGCKTEIPTPDSIVRAESPLQLHISTSMMESFMKLAKSNTDKNLETCGILAGLLKNRKFYITALIIPKQEATSSSQCQATNEEEIFEVQDKQSLFPLGWIHIMLPEAVAIVMAPTDSSRRHGIFRLTSPGGMSVIRQCQQRGFHSHNQPPDGGPIYDTCTDVYMNPDLKFNVIDLR 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2553 489 SUPERFAMILY USP8 N-terminal domain-like 23 115 - -
Aed5g2553 489 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 4 414 - -
Aed5g2553 489 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 415 489 - -
Aed5g2553 489 Pfam USP8 dimerisation domain 9 104 IPR015063 -
Aed5g2553 489 CDD MPN_AMSH_like 334 489 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Aed5g2553 489 PANTHER AMSH-LIKE PROTEASE 415 489 - -
Aed5g2553 489 SUPERFAMILY JAB1/MPN domain 334 445 - -
Aed5g2553 489 MobiDBLite consensus disorder prediction 187 206 - -
Aed5g2553 489 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 332 414 IPR000555 GO:0005515|GO:0008233|GO:0008237
Aed5g2553 489 Gene3D Cytidine Deaminase, domain 2 416 489 - -
Aed5g2553 489 Gene3D Cytidine Deaminase, domain 2 322 415 - -
Aed5g2553 489 Gene3D - 3 123 - -
Aed5g2553 489 PANTHER AMSH-LIKE PROTEASE 4 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2553 Aed-Chr5 26406352 26411981 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2553 K11866 - gmx:100800636 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2553 5 26406352 26411981 Aed5g2553 5 26406352 26411981 ECH