Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2548 ATGAGTAGTAGTAAGAAAAGGTTGATTCCTCTTAATCTGGAAGATGCTGCAGTGGAGATATTAAACCATGTGACGAAGCTGAAGGAGAAGGGATGGATTTCACTCTTGATTCCACTCATTTTGATTGCTTGGGCTATTCACAGATGGCTCTTCTCTTTCTCCAATTGGCTTCCCCTTGCACTTGCTATATGGGCATCTATGCAACCCATGACACCATTAGAACATTGTGATTGGTTGAATCTGCTGTTGACACAAATTTGGTCCAACTATTTTAACCCCAAGTTCTCGACAAGGTTAAAAGCCATAGTTGAGAAACGGTTAAAGCTTCGGAAACCAAGATTTATAGAAAAGGTTGAGGTGCAAGAGTTTTCACTTGGATCATGCCCTCCAAGTTTGGGTCTTCAAGGGATGCGATGGTCAACCTCCGGTGGTCAGCGAGTCCTGAAAATGAGTTTTGATTGGGACACGAGTGAAATGAGCATTTTGATGCTTGCTAAGCTTTCCGTTGGAACAGCCAGAATTGTGATTAACAGTCTTCATATGAAGGGTGAAGATAAACTTTTTACTGACACTTTAGCTAAAACCATGGTGGAACCTCGGCGTCGTTGTTTCAGTTTGCCTGTGGTTAATTTGAGGAAACCTGCTGTCGGAGGCATTATATATGTGTCAGTGATTTCAGCAAACAAACTTTCTAGGAGTTGCTTCAAGAGTACCCCATCTTTGAGGCAACAAAACAGCACAATCAATGGATGTTCAGAAAACAACCTGGATGACAATGACCTACAGACATTTGTAGAGGTAGAAGTGGAGGAATTGACAAGGAGGACGGGTCTGAGCCATGGTTCAAATCCAATGTGGGATACGACATTTAATATGGTTTTACATGATAATACAGGAATTTTTCGCTTCAATCTTTATGAGTGTCCCTCAAGTGGTGTCAAGTGTGATCACCTAGCAAGTTGTGAAATCAAGATGAGGCACGTTGAAGATGATTCAACAATAATGTGGGCAGTAGGACCTGATTCCAATGCAATAGCAAAGCATGCAAAGTTTTGTGGAGATGAAGTTGAAATGGTTGTCCCATTTGAGGGGACCAACTCAGTAGAGTTAAAGGTGAAGATTGTAGTAAAAGAGTGGCAGTTTTCTGATGGTTCGCATAGCTTGAACAGCCTCCCTGCTAATTCTCAGCGGTCACTTATTGGATCATCAAGTCTTCTGCCAAGGACTGGAAGGAAACTTAAGATAACTGTTGTAGAAGCAAAGGATCTCACTGCAAAAGACAAATCTTCAAAAATTGACCCATACATTAAATTGCAATATGGAAAGGTTGTCAAGAAAACAAAGGTTTCTCCTACTACTACTACTCCAAATCCTGTCTGGAATCAAACATTTGAATTTGATGAGAATGATGGTGATGAATACCTAAATGTAAAATGCTTTAGTGAAGAAATTTTTGGAGATGAAAATATTGGTAGTGCAAACGTAAATTTGGAAGGGCTGGGGGACGAGTCAATTAAGGACGAATGGATCCCTCTTGAAGGAGTGAATTCGGGTGAATTAAGACTTAAAATTGAAGTTGTTAGGGTGGAGGACCAAGAAGGATCAAGGGGTTCAACCAATGGTTGGATCGAACTTGTTGTGATTGAAGCAAGGGATCTTATTGCTGCTGATTTTCGAGGGACAAGTGATCCTTATGTGAGGGTAAACTATGGAAACTCAAAGAAAAGGACAAAGGTTATACACAAAACACTCAACCCTCGTTGGAACCAGACCTTAGAGTTCCTTGACGATGGAAGTCCCTTGATACTGCATGTTAAGGACCACAATGCTTTACTACCCGAATCAAGCATAGGTGAATGTGTTATAGAATATCAAAGGTTGCCTCCAAACCAGATGTCTGACAAGTGGATACCTCTCCAAGGGGTGAAAAGTGGTGAGATCCACATCCAAATTACAAGAAAAGTTCCAGAAATGCAAACAAGACATTCTCTAGACTCTCAACCTTCTTCGTTAAGTAAATCACACCAAATTCCTACCCAGATGAGAGAGATGATGAAAAAGTTTCGATCGTTAATAGAAGATGAAAATCTTGAAGGACTGACTACAAGTTTGAGTGAGTTAGAAAGTCTAGAGGACACACAGGAAGGGTATATAACACAGTTGGAGACAGAGCAAATGCTTCTAATCAGCAAAATAAATGAACTGGGTCGGGAGATCATCTACTCTTCTTCTTCCCGCGCTAGTAGTCCTTTCCAAAGTGGAAATTGA 2268 0.4083 MSSSKKRLIPLNLEDAAVEILNHVTKLKEKGWISLLIPLILIAWAIHRWLFSFSNWLPLALAIWASMQPMTPLEHCDWLNLLLTQIWSNYFNPKFSTRLKAIVEKRLKLRKPRFIEKVEVQEFSLGSCPPSLGLQGMRWSTSGGQRVLKMSFDWDTSEMSILMLAKLSVGTARIVINSLHMKGEDKLFTDTLAKTMVEPRRRCFSLPVVNLRKPAVGGIIYVSVISANKLSRSCFKSTPSLRQQNSTINGCSENNLDDNDLQTFVEVEVEELTRRTGLSHGSNPMWDTTFNMVLHDNTGIFRFNLYECPSSGVKCDHLASCEIKMRHVEDDSTIMWAVGPDSNAIAKHAKFCGDEVEMVVPFEGTNSVELKVKIVVKEWQFSDGSHSLNSLPANSQRSLIGSSSLLPRTGRKLKITVVEAKDLTAKDKSSKIDPYIKLQYGKVVKKTKVSPTTTTPNPVWNQTFEFDENDGDEYLNVKCFSEEIFGDENIGSANVNLEGLGDESIKDEWIPLEGVNSGELRLKIEVVRVEDQEGSRGSTNGWIELVVIEARDLIAADFRGTSDPYVRVNYGNSKKRTKVIHKTLNPRWNQTLEFLDDGSPLILHVKDHNALLPESSIGECVIEYQRLPPNQMSDKWIPLQGVKSGEIHIQITRKVPEMQTRHSLDSQPSSLSKSHQIPTQMREMMKKFRSLIEDENLEGLTTSLSELESLEDTQEGYITQLETEQMLLISKINELGREIIYSSSSRASSPFQSGN 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2548 755 PANTHER OS01G0128800 PROTEIN 186 749 - -
Aed5g2548 755 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 212 333 IPR035892 -
Aed5g2548 755 MobiDBLite consensus disorder prediction 658 677 - -
Aed5g2548 755 PANTHER PLANT SYNAPTOTAGMIN 186 749 - -
Aed5g2548 755 ProSiteProfiles C2 domain profile. 391 510 IPR000008 -
Aed5g2548 755 ProSiteProfiles C2 domain profile. 516 637 IPR000008 -
Aed5g2548 755 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 72 292 IPR031468 GO:0008289
Aed5g2548 755 Pfam C2 domain 543 639 IPR000008 -
Aed5g2548 755 Pfam C2 domain 219 331 IPR000008 -
Aed5g2548 755 Pfam C2 domain 412 512 IPR000008 -
Aed5g2548 755 Gene3D C2 domain 401 528 IPR035892 -
Aed5g2548 755 Gene3D C2 domain 529 654 IPR035892 -
Aed5g2548 755 SMART C2_3c 412 509 IPR000008 -
Aed5g2548 755 SMART C2_3c 219 337 IPR000008 -
Aed5g2548 755 SMART C2_3c 542 636 IPR000008 -
Aed5g2548 755 MobiDBLite consensus disorder prediction 661 677 - -
Aed5g2548 755 CDD C2 543 639 - -
Aed5g2548 755 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 412 526 IPR035892 -
Aed5g2548 755 PANTHER PLANT SYNAPTOTAGMIN 69 184 - -
Aed5g2548 755 PANTHER PLANT SYNAPTOTAGMIN 1 68 - -
Aed5g2548 755 PANTHER OS01G0128800 PROTEIN 69 184 - -
Aed5g2548 755 PANTHER OS01G0128800 PROTEIN 1 68 - -
Aed5g2548 755 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 540 652 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2548 Aed-Chr5 26379074 26384870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2548 413 716 Lipid Metabolism Gene Families AT3G61300 25.369 9.57e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2548 - - gmx:100805496 1308.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0206 7 1454527 1462063 Aed5g2548 5 26379074 26384870 ECH
Aed5g2548 5 26379074 26384870 Aed5g2548 5 26379074 26384870 ECH
Aed5g2548 5 26379074 26384870 Aed7g0206 7 1454527 1462063 PCT