Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2547 ATGCGATTAAGCATCACAATAACTGCTCTACTATCAATATCATCACATTCACTCCCACCCTCTGTTCTCTTCTCCTCCTCTTCTTCCAAATTCAAATTCCCACTCGGAATTCGCATTCGCGCTCTCACTTCTTTCCCAACCACCTGCGTCGACGACGACGACGACGATTTATTCGACCCTCTCCCCCTTCCCACTCACCGCCACGTCGACAAAGCCACCAACGCCATCGAGAGAATTGCCCTCCGCTTGCGCAACTTAGGGTTAACTTCCGCCGACGCCGAAGACGATTTCCTGAGCCGCGAATGGCTTCGTCCCGACCAGGCACTTTTGCCGTGGGACAACGAACAACAACAAGAAGAGGAACATCAACATGAGAACCTGAAGAAGAACAAGAAGAACGTTAATGCTGCGGCGACATTGGCGGAGCAGACGCTGGAGGTGGAGGAGCTGCGGCGGTTGCGAACCCTGGGAATGAGTCTTAAGGAGAAGCTCACTATCCCCAAAGCTGGCCTCACGCCACCCGTGCTCGACAAGATTCACTCTCAGTGGGCCAACTGCGACTTGGTCAGGCTCAAGTTTCACGAGTTTCTTGCTCAGAACATGAAGTTGGCTCATCAAATTGTCGAGCATAGGACTAGAGGGTTAGTTATATGGAGGTCAGGGAGTTATATGTGGGTTTACCGTGGTAGGAATTATCAAGGGCCGGTGGAGAGTGATGCAGCATCCCTGGAAAAGAGTAAGGCAGTTTGGTGGAAGAAAGAGAACATGACTCCAGAGGAAGAAGAATTCAACAGAATGCTGGATGGCTTTGGTCCTCGATTTGTTGAATGGTGGGGTACTGGAATACTTCCTGTTGATGCTGATTTACTCCCCCCTACGGTTCCTGGTTACAAGACGCCCCTTAGGCTTCTTCCTGGTGGAATGCATCCGAGACTGACCAATGATGAACTCACGAATATGCGGAAGCTTGCCAAATCTCTTCCTTGTCACTTTGCCTTGGGTAATGATCATCTGCTGAACTGGAGAAATAGAAATCTTCAAGGTCTGGCATCTGCTATTCTCAGGCTTTGGGAGAAAAGTTTAGTTGCAAAAATTGGTGTCAAGCGTGGTATTGTGAATACAAACAATGAACTGATGGCTCATGAGCTGAAGAAATTAACAGGAGGTACCTTACTGCTAAGGAATAAATATTACATTGTAATATATCGTGGGAAGGACTTTGTTCCAACCAGTGTGGCTGCTATTATTGCTGAAAGACAGGAATTGACAAAACAGGTGCAGGATGTTGAGGACAAGGTGCGGTGCAAGGCTTTCGATGTAACTACATCAGGGGAAGATGAAGCAACAGCTCAAGCAGGATCGTTGGCTGAGTTCTATGAGGTACAGGCATGCTGGGGAAGGGATATATCTACCGAAGAACGTAAGAGGATGATGCAAGAGGTTACCAAAGCCAAAAATGCTAAGCTTGTAAAAAAAATTGAACGCAAACTAGCTGTTGCCCAGGCCAAAAGGCTTAAAGCAGAAAATCTATTAGCTAAAATAGAAGCTTCATTGGTTCCAGTTGGTCCTGACTATGACAAGGAAACAATCACAGATGAAGAACGGGCTATGTTCCGTTCAGTTGGTTTAACAATGAAGGCATACTTGCCACTTGGTATACGTGGTGTTTTTGATGGTGTCATTGAGAATATGCATTTGCATTGGAAACATCGAGAACTTGTTAAATTAATAACAAAACAAAAGACCCTTGCTTTTGTTGAAGACACAGCTAGGTTATTGGAATATGAGAGTGGTGGAATACTCGTGGCAATAGATAAACTCCCTAAAGGATTTTCTCTTATTTACTATCGGGGAAAGAATTATAGGCGACCTATGACTTTAAGGCCTAGAAACCTTCTAACGAAGGCAAAGGCATTGCAGCGTTCAATAGCCATGCAACAGCATGAGGCTCTGAGTCAGCATGTAACTGAATTGGGGGAAAAAATTGAAGAAATGAAAAAAGAACTTGGTTTGTCTCAAGATTTGATGCTTGAAGATAGGTGGAACGTAGAGGACAGCAACCAAATAGACCATACATCAGAATTCACCCTAAGTGAAGATGAATACTCTGATGGAGATGACAATGACGAGGATTCTGAATTTTAA 2145 0.4517 MRLSITITALLSISSHSLPPSVLFSSSSSKFKFPLGIRIRALTSFPTTCVDDDDDDLFDPLPLPTHRHVDKATNAIERIALRLRNLGLTSADAEDDFLSREWLRPDQALLPWDNEQQQEEEHQHENLKKNKKNVNAAATLAEQTLEVEELRRLRTLGMSLKEKLTIPKAGLTPPVLDKIHSQWANCDLVRLKFHEFLAQNMKLAHQIVEHRTRGLVIWRSGSYMWVYRGRNYQGPVESDAASLEKSKAVWWKKENMTPEEEEFNRMLDGFGPRFVEWWGTGILPVDADLLPPTVPGYKTPLRLLPGGMHPRLTNDELTNMRKLAKSLPCHFALGNDHLLNWRNRNLQGLASAILRLWEKSLVAKIGVKRGIVNTNNELMAHELKKLTGGTLLLRNKYYIVIYRGKDFVPTSVAAIIAERQELTKQVQDVEDKVRCKAFDVTTSGEDEATAQAGSLAEFYEVQACWGRDISTEERKRMMQEVTKAKNAKLVKKIERKLAVAQAKRLKAENLLAKIEASLVPVGPDYDKETITDEERAMFRSVGLTMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLITKQKTLAFVEDTARLLEYESGGILVAIDKLPKGFSLIYYRGKNYRRPMTLRPRNLLTKAKALQRSIAMQQHEALSQHVTELGEKIEEMKKELGLSQDLMLEDRWNVEDSNQIDHTSEFTLSEDEYSDGDDNDEDSEF 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2547 714 PANTHER (CRM) DOMAIN PROTEIN, PUTATIVE-RELATED 17 711 - -
Aed5g2547 714 SUPERFAMILY YhbY-like 144 236 IPR035920 -
Aed5g2547 714 SMART CRS1_YhbY_2 312 403 IPR001890 GO:0003723
Aed5g2547 714 SMART CRS1_YhbY_2 145 228 IPR001890 GO:0003723
Aed5g2547 714 SMART CRS1_YhbY_2 530 617 IPR001890 GO:0003723
Aed5g2547 714 Gene3D - 529 629 IPR035920 -
Aed5g2547 714 Gene3D - 144 240 IPR035920 -
Aed5g2547 714 Gene3D - 311 411 IPR035920 -
Aed5g2547 714 ProSiteProfiles CRM domain profile. 143 239 IPR001890 GO:0003723
Aed5g2547 714 Coils Coil 648 668 - -
Aed5g2547 714 Coils Coil 114 153 - -
Aed5g2547 714 MobiDBLite consensus disorder prediction 688 714 - -
Aed5g2547 714 Pfam CRS1 / YhbY (CRM) domain 312 403 IPR001890 GO:0003723
Aed5g2547 714 Pfam CRS1 / YhbY (CRM) domain 531 617 IPR001890 GO:0003723
Aed5g2547 714 Pfam CRS1 / YhbY (CRM) domain 146 228 IPR001890 GO:0003723
Aed5g2547 714 ProSiteProfiles CRM domain profile. 528 628 IPR001890 GO:0003723
Aed5g2547 714 MobiDBLite consensus disorder prediction 699 714 - -
Aed5g2547 714 SUPERFAMILY YhbY-like 529 627 IPR035920 -
Aed5g2547 714 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 17 711 IPR045278 GO:0000375|GO:0003729
Aed5g2547 714 Coils Coil 490 517 - -
Aed5g2547 714 ProSiteProfiles CRM domain profile. 310 414 IPR001890 GO:0003723
Aed5g2547 714 Coils Coil 412 432 - -
Aed5g2547 714 SUPERFAMILY YhbY-like 312 410 IPR035920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2547 Aed-Chr5 26372990 26378924 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2547 - - gmx:100776626 1100.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2547 5 26372990 26378924 Aed5g2547 5 26372990 26378924 ECH
Aed5g2547 5 26372990 26378924 Aed7g0205 7 1447775 1452857 PCT