Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2531 ATGTCTCAAATCTTCGAGTACTTCGTGGTGTGCGGGATCGGACCAGAGATTCGAACCATCGACGGAAGCAAAGGGTACCATGGCACTAGCTACATGTATCTTCCTTCTCTTCTCGACCAGTATCCTCCTCCCAATCACACTCTATATCCTCCTCCGCCGCCTCAGCTTTCCACATGTGTTCTACCGGCTGGAATTGAATTATTTTCGTCAGGATTTGATTCCAACGATCCTGCTTCGTTTCCACGGAGCTATCCGATTGTTTTGACAGAGGGTGATGGATCAAAAATCTATGTCACCTGCATTTCTTTCCGGGATCCAGTTTGTGAGGATATTGCAGAGGCCTACCGGATACAGGCAAATTCATATGCTGACAAATGCATCTGTCTTGTTTCACGCTTGCCAAGTTTCTCCATACTAAGAAGTGCTCTAGAGGAAATATTTACTCTGTGTTTTTCCCCAAATGGATGTAGCAAGCCTCTATGGGATGTTATAGAACATATGGTATCCAGTGTGCCCCTGCCAACTCCTGGAAAGGAGCGAGTTCTGTTTGCTATAGAGAATTGTCTGCTTTCTGCAGAGGCTCCACCTAATGATTGGCTTCCCCATGCTGATATATCATTTCAGCCTCTGGTGCAGTGCTTGGATGTTGACAACTTAATGAAACTTTTTACAGCAGTGTTGCTTGAGAGAAGAGTTTTGCTTCGAGCTAACAAGTATTCACTTCTAACTCTTGCATCAGAGGCCATTTGTCACTTAATCTACCCATTCCGATGGCAGCATGTATACATTCCGTTGCTGTTTTTCAGTGGAGTAGATTATATCGATGCTCCTACACCGTATATGATGGGACTCCATTCGGGTGTTGATACTACTGGTCTAGCAATAGATGGGGTTGTTGTTGTGGACCTTGAGTATAATCGTATCACTACCTCAGAGGAAATTCCTCCTCTTCCCGAGCCAGAATCCAGCCTTTTGCGTGGTGAGATAATGAAGCTATTATATCCCAATGTAATTGGAATTGATGAGATGAAGGCTGGAATATATCGTGTATCTGAGAATTATCCTAAACTTAGGGCTAAGCAATGGGGAGAGGAACATGACCTTCAGCTAAGGATGATATTCCTGAAGTTCTTTGCAACAGTTTTAAGTGGCTATCGCAATTTCCTAGAAAATAGTGCTACTCAAATCTTCAACACTCAAGCTTTTTTGAAGAAGCGGTCTCGATCTACTAACCAACCAACAGAGCCCATGATAGCTCAGTTCCTTGAATCTCAAGGTTTCTTGGATTATTTGGATAGAGGAGTAGGTTCTGATGAAAACAACAATAATCTGCTTGATAAGCTACAAGATGCTATCGGAAGGGGTCAAAACCCTATGTCAATTCTTCCTTCATCCTCAGTGGAACCTGAGATTTTAACAGTATCAGATTCTGATGTTGGAATATCAGGATCTGGTGCCAAATACACTTATGATCGATTTCCTGCAACTATCAGAACAGAAGAACAAGAAGAAAAGAGGAAACAGATTCTTGCAGCAGTTAGTAATGCTTTTGAGTACTCAGGAAGGCATACTCCAAGCAGTAAGGATCCTTTAGCAGATACTCTTAGTCCACTTGAGAGAGCTGCTGAAAGGGAGCGCATGGTGCTAGATATTAAGGTTAAGCTGCAGGGTTTATGGCTGCGGCTTCTTAAACTGGGAGCAACGGATGATCCTCTCTCATCCTTTGAATATGGAACAATACTCGCTTTGATTGAATCTGATGCAGAGGGGATTGGCGGTAGTGGATTTGTTGAATGTATAAGGGAGCATATACATTCGGGTTGGGACTGTCATCTCACTGAAGAACAGTTTATTGCAGTGAAAGAATTGCTTAAAACAGCTATCAATCGTGCAACATCACGGAATGACCTTTTGACCGTTAGAGATGCTCTTGAAGTTTCTTCTGACATGTATAAGAAAGATAATAATAGTGTGCCAGACTATGTCCAACGTCATCTTATCTCTTTATCTATTTGGGAGGAATTACGATTTTGGGAAGGATATTTTGACTGTTTAATGGAGCAATCTTCAAACAAGTCTGCCAACTATGCATCTTTGGTGACAGCTCAGCTTGTGGTGTTGGTATCACACATGGCTGGGTTGGGACTTCCTGATAATGATGCATGGTACATGATCGAAACAATTGCAGAGAGGAACAGCATTGGATCCAAGCAATTTATAAAAATCAGAGGGTTCTTGTCTCATATCCAGCAATTACGCAATGGATACTGGGGAATCACCTCAATGAAGGCACAATCTGTGTTTTCACTTGCATTGCCATCCCCACATTCTAAAGATGCCAATGATGAGAACCAGCAACCCACTGAGGCAACTGGTGTTGGTAGAAACTGGGTGCAGAGTATGTTCACCCGAAATAACACAACTAGATCCAGCTCATTTAGTCGTCTACAAATGAGAATGGGACTCCTCGCAAACAAGATCTATCAAGTTAAGATCTGGGATCCTAGTCTTCGTGGTTCTGAACTCAGGGCAACTTTGAAAGGGCATACTAGAACTATACGCGCCATAAGTTCCGATAGGGGGAAGGTGGTGTCAGGATCTGATGATCAATCTGTTTTGGTGTGGGATAAGCAAACAACTCAACTTCTAGAAGAGCTTAAAGGCCATGATGGACCGGTCAGCTGTGTGCGCACGCTCTCAGGTGAACGCGTGTTAACTGCATCCCATGATGGCACTGTGAAGATGTGGGATGTAAGAACTGATAGATGTGTTGCAACTGTTGGTCGTTGCTCTAGTGCTGTTCTATGCATGGAATATGATGACAATGTGGGAGTCTTGGCTGCTGCTGGAAGAGACGTGGTTGCTAACATATGGGATATTCGTGCTAGTAGGCAGATGCATAAACTTTCAGGACATACACAATGGATACGGTCTATAAGAATGGTTGGTGACACTGTGATTACTGGTAGTGATGATTGGACGGCAAGAATATGGTCTGTTTCCCGAGGAACATGTGATGCTGTCCTAGCATGCCATGCAGGGCCAATATTATGTGTTGAATATTCTTCTTTAGACAGAGGAATAATTACAGGGTCCACTGATGGCCTGCTACGTTTTTGGGAAAATGATGATGGAGGTATACGGTGTGCAAAAAATGTAACAATTCACAATGCTGCCATATTATCTATCAATGCTGGGGAGCATTGGTTAGGCATTGGAGCAGCTGATAATTCTTTGTCACTCTTTCACCGGCCCCAAGAAAGACTTGGTGGTTTTTCTGGCACTGGGTCCAAGATGGCTGGTTGGCAGCTTTACAGAACACCGCAGAAAACAGTTGCTATGGTAAGATGTGTTGCTTCAGACTTGGAAAGGAAAAGGATATGCAGCGGTGGTCGCAATGGCCTTCTAAGGCTGTGGGATGCAACCATTAATATTTAA 3438 0.4337 MSQIFEYFVVCGIGPEIRTIDGSKGYHGTSYMYLPSLLDQYPPPNHTLYPPPPPQLSTCVLPAGIELFSSGFDSNDPASFPRSYPIVLTEGDGSKIYVTCISFRDPVCEDIAEAYRIQANSYADKCICLVSRLPSFSILRSALEEIFTLCFSPNGCSKPLWDVIEHMVSSVPLPTPGKERVLFAIENCLLSAEAPPNDWLPHADISFQPLVQCLDVDNLMKLFTAVLLERRVLLRANKYSLLTLASEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDTTGLAIDGVVVVDLEYNRITTSEEIPPLPEPESSLLRGEIMKLLYPNVIGIDEMKAGIYRVSENYPKLRAKQWGEEHDLQLRMIFLKFFATVLSGYRNFLENSATQIFNTQAFLKKRSRSTNQPTEPMIAQFLESQGFLDYLDRGVGSDENNNNLLDKLQDAIGRGQNPMSILPSSSVEPEILTVSDSDVGISGSGAKYTYDRFPATIRTEEQEEKRKQILAAVSNAFEYSGRHTPSSKDPLADTLSPLERAAERERMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHIHSGWDCHLTEEQFIAVKELLKTAINRATSRNDLLTVRDALEVSSDMYKKDNNSVPDYVQRHLISLSIWEELRFWEGYFDCLMEQSSNKSANYASLVTAQLVVLVSHMAGLGLPDNDAWYMIETIAERNSIGSKQFIKIRGFLSHIQQLRNGYWGITSMKAQSVFSLALPSPHSKDANDENQQPTEATGVGRNWVQSMFTRNNTTRSSSFSRLQMRMGLLANKIYQVKIWDPSLRGSELRATLKGHTRTIRAISSDRGKVVSGSDDQSVLVWDKQTTQLLEELKGHDGPVSCVRTLSGERVLTASHDGTVKMWDVRTDRCVATVGRCSSAVLCMEYDDNVGVLAAAGRDVVANIWDIRASRQMHKLSGHTQWIRSIRMVGDTVITGSDDWTARIWSVSRGTCDAVLACHAGPILCVEYSSLDRGIITGSTDGLLRFWENDDGGIRCAKNVTIHNAAILSINAGEHWLGIGAADNSLSLFHRPQERLGGFSGTGSKMAGWQLYRTPQKTVAMVRCVASDLERKRICSGGRNGLLRLWDATINI 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2531 1145 Gene3D - 1 176 - -
Aed5g2531 1145 Gene3D - 824 949 IPR015943 GO:0005515
Aed5g2531 1145 PANTHER DENN DOMAIN-CONTAINING PROTEIN 3 4 1145 - -
Aed5g2531 1145 ProSitePatterns Trp-Asp (WD) repeats signature. 904 918 IPR019775 -
Aed5g2531 1145 Gene3D - 950 1144 IPR015943 GO:0005515
Aed5g2531 1145 SMART DENN_cls 122 306 IPR001194 -
Aed5g2531 1145 Pfam uDENN domain 35 103 IPR005113 -
Aed5g2531 1145 PRINTS G protein beta WD-40 repeat signature 986 1000 IPR020472 -
Aed5g2531 1145 PRINTS G protein beta WD-40 repeat signature 904 918 IPR020472 -
Aed5g2531 1145 PRINTS G protein beta WD-40 repeat signature 863 877 IPR020472 -
Aed5g2531 1145 ProSitePatterns Trp-Asp (WD) repeats signature. 1127 1141 IPR019775 -
Aed5g2531 1145 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 846 876 - -
Aed5g2531 1145 Pfam DENN (AEX-3) domain 123 304 IPR001194 -
Aed5g2531 1145 ProSiteProfiles Trp-Asp (WD) repeats profile. 886 926 IPR001680 GO:0005515
Aed5g2531 1145 Pfam WD domain, G-beta repeat 881 917 IPR001680 GO:0005515
Aed5g2531 1145 Pfam WD domain, G-beta repeat 965 999 IPR001680 GO:0005515
Aed5g2531 1145 Pfam WD domain, G-beta repeat 844 876 IPR001680 GO:0005515
Aed5g2531 1145 Pfam WD domain, G-beta repeat 1004 1040 IPR001680 GO:0005515
Aed5g2531 1145 ProSiteProfiles Trp-Asp (WD) repeats profile. 969 1008 IPR001680 GO:0005515
Aed5g2531 1145 ProSiteProfiles Trp-Asp (WD) repeats profile. 846 885 IPR001680 GO:0005515
Aed5g2531 1145 Pfam dDENN domain 397 447 IPR005112 -
Aed5g2531 1145 PANTHER C-MYC PROMOTER BINDING PROTEIN 4 1145 - -
Aed5g2531 1145 SMART uDENN_cls 1 104 IPR005113 -
Aed5g2531 1145 Gene3D - 202 387 IPR043153 -
Aed5g2531 1145 SMART WD40_4 879 917 IPR001680 GO:0005515
Aed5g2531 1145 SMART WD40_4 962 999 IPR001680 GO:0005515
Aed5g2531 1145 SMART WD40_4 920 959 IPR001680 GO:0005515
Aed5g2531 1145 SMART WD40_4 1101 1140 IPR001680 GO:0005515
Aed5g2531 1145 SMART WD40_4 1046 1083 IPR001680 GO:0005515
Aed5g2531 1145 SMART WD40_4 1002 1041 IPR001680 GO:0005515
Aed5g2531 1145 SMART WD40_4 839 876 IPR001680 GO:0005515
Aed5g2531 1145 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 886 920 - -
Aed5g2531 1145 ProSiteProfiles Tripartite DENN domain profile. 18 442 IPR037516 -
Aed5g2531 1145 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1009 1041 - -
Aed5g2531 1145 CDD WD40 842 1140 - -
Aed5g2531 1145 SMART dDENN_cls 366 434 IPR005112 -
Aed5g2531 1145 SUPERFAMILY WD40 repeat-like 840 1140 IPR036322 GO:0005515
Aed5g2531 1145 ProSiteProfiles Trp-Asp (WD) repeats profile. 1009 1041 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2531 815 1076 Miscellaneous Gene Families AT5G08390 21.583 2.75e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2531 - - adu:107478726 1902.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2531 5 26277777 26294652 Aed5g2531 5 26277777 26294652 ECH