Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2256 ATGGCGTTGCAGGAGAGGCTAGAGAAGTTCAAGAAGCAGCAAGAGAAGTGCCAAAGTACACTTTCCAGCATTGCAGCAAGCAAGCATGTTGTCCCTGCGGTTAAGTTTTCTAACGACACAGAGAGGCTTCAGCATATTAATAGCATTCGCAAAGCCCCTGTCGGTGCTCAGATGAAGCGTGTTATTGATCTTCTTCTAGAGACAAGGCAAGCTTTAACGCCAGAGCAGATAAACGAGGCATGCTATGTTGACATGAAGGCTAACAAAGATGTTTTTGAGAATCTCAGAAAAAACCCGAAAGTGAAGTATGATGGGCAACGATTGTCTTACAAGGTTACTTTTATTCATACACATACATACATATATATATATATATATATATATATATATATATATTCCTTTAGAAATTAA 411 0.3844 MALQERLEKFKKQQEKCQSTLSSIAASKHVVPAVKFSNDTERLQHINSIRKAPVGAQMKRVIDLLLETRQALTPEQINEACYVDMKANKDVFENLRKNPKVKYDGQRLSYKVTFIHTHTYIYIYIYIYIYIYSFRN 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2256 136 Pfam TFIIE beta subunit core domain 56 113 IPR003166 GO:0006367
Aed5g2256 136 PANTHER INITIATION FACTOR TFIIE, BETA SUBUNIT, PUTATIVE-RELATED 1 129 - -
Aed5g2256 136 ProSiteProfiles TFIIE beta central core DNA-binding domain profile. 42 123 IPR003166 GO:0006367
Aed5g2256 136 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT 1 129 IPR016656 GO:0005673|GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2256 Aed-Chr5 24453001 24455048 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2256 K03137 - gmx:100793998 195.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1702 11 20689123 20690994 Aed5g2256 5 24453001 24455048 PCT