LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed5g2242	ATGGGCGAGGAAGAGAAAAAACCAGAGGAAAGCAAAGTGGAGGAGGAGAAGAAAGCAGAGGAACCAAAGAAGGAAGAAGAAGCGAAGAAACCAGAGGAAGAGAAAAAAGCAGAGGAATCAAAAGATGACAAAGAATCCAAGGAGGAAGCTGTGCCGCCAGAAATCGTGCTTAAAGTGTTCATGCATTGCGAAGGTTGTGCTCGCAAGGTTCGTCGCTCCCTCAAAGGATTCCCAGAGTTTGTCGGAATTTCAGGGGTGGAAGATATAGTCACAGATTGCAAGACTCACAAGGTGGTCGTGAAAGGAGAAAAAGCGGATCCGCTCAAGGTTTTAGAGAGAGTACAGAGGAAAAGCCATAGAAAGGTTGAACTTCTCTCTCCGATCCCAAAGCCACCCGCGGAGGAGGAGAAGAAACCCGAAGCAGAAGAGAAGCCCAAACCAGAGGAGAAGAAAGAAGAGCCTCAGGTTATCACTGTTGTTCTGAGAGTCCACATGCATTGCGAAGCTTGCGCCCAGGAAATCAAGAGAGGCATCGAGAAAATGAAAGGGGTGAAATCAGCGGAAGCGGATCTGAAGAAGTTGGAGGTGAGCGTAAAGGGGGTGTTCGAGGTGGAGAAGTTGGTGGAGCACGTGTACAAGAGGACAGGGAGGCATGCAGTGATAGTGATAGTGAAGCAAGAGCCAGAGAACAAGGAAGAAGAAAAAACAGAGGAAGGTGAGAAGAAGGAAGAGAAAGGAGAGGAGAAGAAAGAAGAAGGTGAAGCCAAAGCAGAGAGTGAGGCAGAAACATCAGTGTTGGAGGTGAAAAAGAGTGAGTATTATTACAATTACAATTACAATCACAATCCAGCACCAAGGTATGGAATGGAGTCCTATGCGTATCCGCCTCAGATCTTCAGTGACGAGAACCCCAATGCCTGCTCTGTCATGTAA	933	0.4737	MGEEEKKPEESKVEEEKKAEEPKKEEEAKKPEEEKKAEESKDDKESKEEAVPPEIVLKVFMHCEGCARKVRRSLKGFPEFVGISGVEDIVTDCKTHKVVVKGEKADPLKVLERVQRKSHRKVELLSPIPKPPAEEEKKPEAEEKPKPEEKKEEPQVITVVLRVHMHCEACAQEIKRGIEKMKGVKSAEADLKKLEVSVKGVFEVEKLVEHVYKRTGRHAVIVIVKQEPENKEEEKTEEGEKKEEKGEEKKEEGEAKAESEAETSVLEVKKSEYYYNYNYNHNPAPRYGMESYAYPPQIFSDENPNACSVM	310

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed5g2242	310	CDD	HMA	160	219	IPR006121	GO:0046872
	Aed5g2242	310	SUPERFAMILY	HMA, heavy metal-associated domain	157	220	IPR036163	GO:0046872
	Aed5g2242	310	MobiDBLite	consensus disorder prediction	120	153	-	-
	Aed5g2242	310	MobiDBLite	consensus disorder prediction	1	52	-	-
	Aed5g2242	310	CDD	HMA	61	123	IPR006121	GO:0046872
	Aed5g2242	310	PANTHER	HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7	1	310	IPR044577	GO:0046872
	Aed5g2242	310	Gene3D	-	50	130	-	-
	Aed5g2242	310	ProSiteProfiles	Heavy-metal-associated domain profile.	165	211	IPR006121	GO:0046872
	Aed5g2242	310	ProSiteProfiles	Heavy-metal-associated domain profile.	61	123	IPR006121	GO:0046872
	Aed5g2242	310	Coils	Coil	23	50	-	-
	Aed5g2242	310	PANTHER	HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7	1	310	-	-
	Aed5g2242	310	MobiDBLite	consensus disorder prediction	1	54	-	-
	Aed5g2242	310	MobiDBLite	consensus disorder prediction	229	263	-	-
	Aed5g2242	310	Gene3D	-	153	222	-	-
	Aed5g2242	310	Pfam	Heavy-metal-associated domain	57	117	IPR006121	GO:0046872
	Aed5g2242	310	Pfam	Heavy-metal-associated domain	160	216	IPR006121	GO:0046872
	Aed5g2242	310	SUPERFAMILY	HMA, heavy metal-associated domain	56	117	IPR036163	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed5g2242	Aed-Chr5	24384271	24386445	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed5g2242	-		-	gmx:100796289	315.849

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed10g0791	10	6554555	6556877	Aed5g2242	5	24384271	24386445	ECH
	Aed5g2242	5	24384271	24386445	Aed5g2242	5	24384271	24386445	ECH
	Aed5g2242	5	24384271	24386445	Aed10g0791	10	6554555	6556877	PCT