Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2143 ATGTTTGATGGGTTTTTCTGCTTTTCCTCTTTGTTCTGTAGCTCTAGCTCGTGGAACCTAGCTTCAGGTGAAAGAGAGACTTTAATTATGGAAACTGGAGAATCAACACATGATTCCCATGAATATGATGGAAGTTCAGCGAATACTAGCGATCATCAACCCCCTTCATATGCTGGGAGTTCGGTGAATACCGGGCATCAACATAAGCAGCGACCCACATATATAGCTGACAATTTCAGTTCATTGGACCAGGTTGTTTCTGCTTTGAGAGAAGCTGGTCTGGAATCTTCAAATTTAATAATTGGTATTGACTTCACCAAGAGCAATGAGTGGACAGGCAAGCACTCCTTCAACCACAAAAGCCTTCATTTTATTGGAAACACTCCTAATCCGTATGAGCAAGCAATCTCTATAATTGGCCGAACTCTCTCTTCATTTGATGAAGACAATCTGATACCATGTTTTGGATTTGGTGATGCATCTACACATGATCAGAATGTGTTCAGCTTTTATCCTGATGATCGCAATTGTCATGGTTTTGAGGAAGTACTTGCATGCTACCGAGAGATTGTGCCACACTTAAAATTGGCAGGTCCAACATCTTTTGCTCCTGTAATCGATGCAGCAGTTGACATTGTGGAAAGAAGCAATGGTCAATATCATGTTCTTGTCATTATTGCTGATGGACAGGTTACTAGAAATTCAGGTACACCACATGGAGTGTTTAGTCCACAAGAACAAGCAACTATTAATTCTATCATTGCTGCAAGTCACTATCCCCTCTCAATTATTTTGGTTGGAGTTGGAGATGGACCATGGGATGAAATGCAGCACTTTGATGATAGCATTACTCAGCGCTTATTTGACAACTTTCAGTTTGTGAATTTCACAAAAATCGTGTCTGAGAACAAAGATGCATCAAAGAAGGAAACAGCATTTGCACTTGCTGCCCTTATGGAAATTCCAATTCAGTACCGGATAACCCAAAATCTACAAGTTGCCAATGAAAAACCAACAAGTCGTCAACGTAAAAGGCCTCTTCCTCCGCCTAAGGAAGTAATAGATCGTGTGAATGCAGTCCTAGCAGTTCCACACGTGACAAATTTTGAATCAGTTGAGCCATCAGCTCCAGCTGCAGCAGAATCAGTATGCCCTATTTGCTTAACCAATCCGAAGGACATGGCTTTTGGATGTGGTCATACAACTTGTAAGGAGTGTGGTGTGACATTATCTTCATGCCCTATGTGCCGGCAAGAAATTACAACTCGCCTGAGACTATTCACATGA 1287 0.4149 MFDGFFCFSSLFCSSSSWNLASGERETLIMETGESTHDSHEYDGSSANTSDHQPPSYAGSSVNTGHQHKQRPTYIADNFSSLDQVVSALREAGLESSNLIIGIDFTKSNEWTGKHSFNHKSLHFIGNTPNPYEQAISIIGRTLSSFDEDNLIPCFGFGDASTHDQNVFSFYPDDRNCHGFEEVLACYREIVPHLKLAGPTSFAPVIDAAVDIVERSNGQYHVLVIIADGQVTRNSGTPHGVFSPQEQATINSIIAASHYPLSIILVGVGDGPWDEMQHFDDSITQRLFDNFQFVNFTKIVSENKDASKKETAFALAALMEIPIQYRITQNLQVANEKPTSRQRKRPLPPPKEVIDRVNAVLAVPHVTNFESVEPSAPAAAESVCPICLTNPKDMAFGCGHTTCKECGVTLSSCPMCRQEITTRLRLFT 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2143 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 428 IPR013083 -
Aed5g2143 428 Pfam Copine 121 333 IPR010734 -
Aed5g2143 428 SUPERFAMILY vWA-like 97 280 IPR036465 -
Aed5g2143 428 SMART ring_2 384 416 IPR001841 -
Aed5g2143 428 Pfam Zinc finger, C3HC4 type (RING finger) 382 422 - -
Aed5g2143 428 SMART VWA_4 96 299 IPR002035 -
Aed5g2143 428 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG3 52 427 - -
Aed5g2143 428 SUPERFAMILY RING/U-box 383 423 - -
Aed5g2143 428 CDD RING-HC_RGLG_plant 383 427 IPR045317 GO:0061630|GO:0070534
Aed5g2143 428 MobiDBLite consensus disorder prediction 46 70 - -
Aed5g2143 428 PANTHER COPINE FAMILY PROTEIN 1 52 427 - -
Aed5g2143 428 MobiDBLite consensus disorder prediction 34 70 - -
Aed5g2143 428 ProSiteProfiles Zinc finger RING-type profile. 384 417 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2143 Aed-Chr5 23644985 23650617 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2143 K16280 - gmx:100791316 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2143 5 23644985 23650617 Aed5g2143 5 23644985 23650617 ECH