Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2134 ATGCAGCTTCTCAAACTTCCTCGTTCTCCATCTTCCTTCGGGAATGCGTTCTTTCTGTTGGGTCATCGTGATGTGTGGAATAAGAAGAGTTTATTCCGTAAGAATCAGAATCAGAGATGTTCCATAATATCGTGTTCGGGTGATTCTAATTATATTGAGCAACTAAGTGATGCACGCCTTATATACTCTGTCGCTTCATCTATGGGCCACAACCAGGAGTCTCATCCAGAATCGCATTTTAGAGTTCCAGCCATTGTCAATGCTCTAGAACAAATGCAACTCACTTCAAAGTTCCGTGGCTCTGAGGTAATTCAACTTCAACATTTTGAGCCTGCTTCAGTAGATGATATTGCAAGTGTGCATGCAAGAGCCTATGTTTCTGGCCTTGAAAAGGCTATGGATCAAGCTGTGGAGAAGGGCCTTATTTTCCTTGATGGTTCTGGACCAACATATGCCACTGCCACTACCTACCAGGAGTCAATAATTGCAGCTGGTGCTGGATTAGCCTTAGTTGACTCAGTGGTGATCTCTCAACCTGGCATGTCCATCTCTTGCATACTGAAAGGGAACATTTTGTTCTTTGTAGCAAATTTGGGCCTTTGCTTTAACAGAACCCAGATGTTGAATGAAATTGCATATATCTTTAAATGTTTGGGGGAGGTTGCAGGTTCAAAGATAAAGAAAGATGCACCCACTGGTTTTGCTCTGATTAGACCACCAGGACATCACGCTGTTCCACAAGGACCTATGGGCTTCTGCATTTTTGGAAATGTGGCCATTGCAGCCCGTTATGCTCAGCGTGTTCATGGACTGAGGCGTGTGTTTATAATTGACTTTGATGTTCATCATGGAAATGGAACAAATGATGCTTTCTATGATGATCCAGATGTGTTTTTTCTTTCATTTCATCAAGATGGAAGCTATCCAGGTACTGGTAAATTTGATGAGGTGGGTAGTGGAGATGGTGAAGGAACCACACTAAATCTGCCTCTTCCTGGAGGCTCAGGTGATACTGCTATTAGAACTGTGTTCGATGAAGTCATTGCACCATGTGCTCAAAGATTTAAACCGGACATTATTCTTGTTTCTGCTGGGTATGACGGACACGTGTTGGATCCACTAGCTAATCTTCAATACACAACTGGAACATATTACATGCTAGCGTCCAGTATCAAACAACTAGCGAGAGATTTATGTGGGGGCCGATGTGTGTTTTTCTTGGAGGGAGGATATAATCTGAAGTCTCTTTCATATTCTGTGGCAGACACATTTCGTGCTCTTCTTGGGGATAGAAGCTTGGCATCTGAGTTTGATAACCCCAACATTTTGTACGAAGAGCCATCTACAAGAGTTAAGCAAGCTATTCAGAGGATAAAACACATTCATTCTCTGTGA 1395 0.4265 MQLLKLPRSPSSFGNAFFLLGHRDVWNKKSLFRKNQNQRCSIISCSGDSNYIEQLSDARLIYSVASSMGHNQESHPESHFRVPAIVNALEQMQLTSKFRGSEVIQLQHFEPASVDDIASVHARAYVSGLEKAMDQAVEKGLIFLDGSGPTYATATTYQESIIAAGAGLALVDSVVISQPGMSISCILKGNILFFVANLGLCFNRTQMLNEIAYIFKCLGEVAGSKIKKDAPTGFALIRPPGHHAVPQGPMGFCIFGNVAIAARYAQRVHGLRRVFIIDFDVHHGNGTNDAFYDDPDVFFLSFHQDGSYPGTGKFDEVGSGDGEGTTLNLPLPGGSGDTAIRTVFDEVIAPCAQRFKPDIILVSAGYDGHVLDPLANLQYTTGTYYMLASSIKQLARDLCGGRCVFFLEGGYNLKSLSYSVADTFRALLGDRSLASEFDNPNILYEEPSTRVKQAIQRIKHIHSL 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2134 464 CDD HDAC_classII 75 428 - -
Aed5g2134 464 Gene3D Histone deacetylase domain 52 190 IPR037138 -
Aed5g2134 464 PRINTS Histone deacetylase superfamily signature 273 288 IPR000286 -
Aed5g2134 464 PRINTS Histone deacetylase superfamily signature 357 367 IPR000286 -
Aed5g2134 464 PRINTS Histone deacetylase superfamily signature 239 262 IPR000286 -
Aed5g2134 464 PANTHER HISTONE DEACETYLASE 47 463 - -
Aed5g2134 464 Pfam Histone deacetylase domain 75 426 IPR023801 -
Aed5g2134 464 PANTHER HISTONE DEACETYLASE 14 47 463 - -
Aed5g2134 464 Gene3D Histone deacetylase domain 203 463 IPR037138 -
Aed5g2134 464 SUPERFAMILY Arginase/deacetylase 70 431 IPR023696 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2134 Aed-Chr5 23587449 23591875 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2134 - - gmx:100788664 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2134 5 23587449 23591875 Aed5g2134 5 23587449 23591875 ECH