Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2118 ATGAAGGGTGGGACGATTCAGATTAGCTGGCACGATAGCAAACCCGTCTTAACCCTCGATTTCCACCCTCTCTCCGCCACTCTCGCCACCGCCGGCGCCGATTTCGACATCAAGTTTTGGGCAATAAAACCCGCGGGGTCACCGAAGAAGCTCCCCGTAGTTTCCTATCTTAGTAATCTCACTTACCATAGCTCCGCAGTTAACGTCATTCGCTTCTCTTCTTCCGGTGAATTGCTAGCCTCTGGTGCTGATGGAGGGGACCTAATAATATGGAAGGTAAAATCTTCTGATACTGGTCAGACATGGAAGGTTCTCTGGATGTTACGATCTCATCTCAAGGACATTCTGGACCTGCAGTGGTCTACCGATGCCACTTATATCATTACTGGATCAGTTGATAATTGTTGCATTGTATGGGATGCTAACAAAGGAACTAATCTTCAGACGTTGGATTCCCATGCACACTATGTTCAGGGGGTTGCATGGGACCCTTTAGGGAAGTATGTTACTTCTCTTAGTTCTGATAGGACTTGCCGAATTTACATGAATAAGCCTAAAAAATCAAAGGGCGTTGAGAAAATCAATTATGTTTGTCAGCAAGTCATTTCCAAGGCAGAACAGCCATTATTAAAGAATTCTAAGGAGACAAAATTTCATCTCTTTCATGATGAGACATTGCCATCTTTCTTCAGAAGATTAGCATGGTCTCCTGATGGTTCATTTCTAGTCGTGCCTGCAGGCTCTTACAAAATTAATACTGCATCTGAATCTGTGAATGCGGCTTACATATTTTCTAGAAAAGATCTTTCTAGGCCTGCTATACAGCTTCCCTGTGCAAGCAAAGCTGTTGTAGCTGTCAGATTTTGCCCCATATTTTTTAAACTTCGGGGAACAAACTCAGCTGGGTTATTTAAGCTCCCATATCGCATCATATTTGCTGTGGCCACTTTGAATTCATTGTACATTTATGACACTGAGAGCGCCTCTCCGATAGCTGTATTAGCTGGCCTTCACTATGCTGCAATAACAGATATTACCTGGTCTTCTGATGCTCGTTATTTGGCATTGTCCTCACAAGATGGTTTCTGCTCTTTGGTGGAATTTGAAAATAACGAACTTGGATCACCTTACTCTTTACCAGAAGGAAAAGCCTCAAACAAGGATGGTGAGAGCACTGTACAGACAACCAATGACACTGTCACTGTACCAACTGGGAATGTTAGTGCAGTTCCAGCAGAGAGCAAGAAAATGGAATCAAAAGGGAAGGCTGATGACATGGTGATTGAAGCATCTGGCAATATTGGTGCTGTCATAACAGAAAGTGGGAAAACTGTAACACAAGAGAAGACTGACATGATCAAGTCAACTGTTAATTTAGCAGATTTTAGGAAAAATGAAGCAAAAGAGAGAGCTTTTGACATGGTCATTGAAGCAACAGGGAATGTTGAAGGGGTTATAGCAGAGAGTAGGAAATATGAAGCAGAAGAGAAAACTGATGACATGGTCATTGAAACAACTGGAAGTATTGGTGCAGCTGAATTAGATAGAAGAAAAGCTGAACCGGAATATAAGGCAGAGAAACAGCCAGCTAATCCAGATTCAGATAGTAAACAACCGGAAGCAAAGGAGAAGACAGAGACTCTTCAATCAAGTTTAGACGGTATAAAATCTGGGCAACAGTTGTCCAGTCCGAAGAGTACAGCCATATCAAATAAGCCAGCCAAGAAGCGTATTACTCCTATTGCCATTGATCCTTGA 1758 0.4255 MKGGTIQISWHDSKPVLTLDFHPLSATLATAGADFDIKFWAIKPAGSPKKLPVVSYLSNLTYHSSAVNVIRFSSSGELLASGADGGDLIIWKVKSSDTGQTWKVLWMLRSHLKDILDLQWSTDATYIITGSVDNCCIVWDANKGTNLQTLDSHAHYVQGVAWDPLGKYVTSLSSDRTCRIYMNKPKKSKGVEKINYVCQQVISKAEQPLLKNSKETKFHLFHDETLPSFFRRLAWSPDGSFLVVPAGSYKINTASESVNAAYIFSRKDLSRPAIQLPCASKAVVAVRFCPIFFKLRGTNSAGLFKLPYRIIFAVATLNSLYIYDTESASPIAVLAGLHYAAITDITWSSDARYLALSSQDGFCSLVEFENNELGSPYSLPEGKASNKDGESTVQTTNDTVTVPTGNVSAVPAESKKMESKGKADDMVIEASGNIGAVITESGKTVTQEKTDMIKSTVNLADFRKNEAKERAFDMVIEATGNVEGVIAESRKYEAEEKTDDMVIETTGSIGAAELDRRKAEPEYKAEKQPANPDSDSKQPEAKEKTETLQSSLDGIKSGQQLSSPKSTAISNKPAKKRITPIAIDP 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2118 585 MobiDBLite consensus disorder prediction 550 573 - -
Aed5g2118 585 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 95 - -
Aed5g2118 585 PRINTS Beta G protein (transducin) signature 127 141 IPR001632 -
Aed5g2118 585 PRINTS Beta G protein (transducin) signature 108 124 IPR001632 -
Aed5g2118 585 PRINTS Beta G protein (transducin) signature 164 181 IPR001632 -
Aed5g2118 585 MobiDBLite consensus disorder prediction 385 406 - -
Aed5g2118 585 SMART WD40_4 327 367 IPR001680 GO:0005515
Aed5g2118 585 SMART WD40_4 53 92 IPR001680 GO:0005515
Aed5g2118 585 SMART WD40_4 3 41 IPR001680 GO:0005515
Aed5g2118 585 SMART WD40_4 143 182 IPR001680 GO:0005515
Aed5g2118 585 SMART WD40_4 101 140 IPR001680 GO:0005515
Aed5g2118 585 MobiDBLite consensus disorder prediction 494 585 - -
Aed5g2118 585 MobiDBLite consensus disorder prediction 377 406 - -
Aed5g2118 585 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Aed5g2118 585 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Aed5g2118 585 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 181 IPR001680 GO:0005515
Aed5g2118 585 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 585 IPR045145 GO:0006335
Aed5g2118 585 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 140 - -
Aed5g2118 585 MobiDBLite consensus disorder prediction 511 549 - -
Aed5g2118 585 Gene3D - 4 208 IPR015943 GO:0005515
Aed5g2118 585 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 585 - -
Aed5g2118 585 Pfam WD domain, G-beta repeat 144 181 IPR001680 GO:0005515
Aed5g2118 585 Pfam WD domain, G-beta repeat 59 92 IPR001680 GO:0005515
Aed5g2118 585 Pfam WD domain, G-beta repeat 10 40 IPR001680 GO:0005515
Aed5g2118 585 Pfam WD domain, G-beta repeat 103 140 IPR001680 GO:0005515
Aed5g2118 585 SUPERFAMILY WD40 repeat-like 12 399 IPR036322 GO:0005515
Aed5g2118 585 Gene3D - 212 412 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2118 25 181 Miscellaneous Gene Families AT5G08390 24.841 7.33e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2118 K10751 - gmx:100784411 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2118 5 23483087 23487348 Aed5g2118 5 23483087 23487348 ECH