Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1948 ATGAATGAAATGAAAGTTATGGAGGCGGTGGGAGAGAAATGGATAAAAATTGTGACGAGTGTGATACTAATATCATTAATGCGGAGTGGAAGTGGAAGCGAGTGCAGTTTCCCAGCGATATTCAACTTGGGAGACTCGAATTCAGACACCGGCGGTCTCTCAGCAGCGTTCGGACAAGCTCCTCCCCCCAACGGAATCACTTATTTCCACTCCCCTCACGGACGCTTCTCCGATGGTCGACTCATAGTCGATTTTATAGCGGAGAGGTCGGGGTTGGGTTATCTGAGTGCTTACTTGGACTCGGTGGGGTCCAACTTCAGTCACGGAGCCAATTTCGCAACAGCTGGATCCACTGTCAGGCCTCAGAACACTACCAAGTCTCAGAGCGGATACAGTCCCATTTCCCTAGACGTTCAGTTTCGCCAGTTCTCTGATTTCAAAGCCAGATCCAAACTCGTTCGCCAACAAGGAGGTGTGTTTAAGGAATTGTTGCCCAAGGAGGAGTATTTTTCTCAGGCTCTTTATACTTTTGATATTGGCCAAAATGATATCACTGCTGGCTACAAACTCAACTTCACCACACAACAAGTCAAGGCATATATACCAGATGTATTGGCCCAGTTCTCCAATGTCATCAAGGGTGTGTATGGGGAAGGTGGAAGGTCGTTTTGGATACACAACACAGGTCCATTGGGATGCTTGCCATACATGCTGGATCGCTATCCCATGAAACCACCCCAAATGGATGACTTTGGGTGTGCCAAACCATTCAACCAGGTGGCCCAATTTTTTAACCGTAAATTAAAACAAGTTGTTCAGCAACTGAGGCAAGAATTGCCAGAAGCTTCAATCACCTATGTTGATGTGTATACGGTGAAGTACACCCTCATCAGCCATGCCCAAAAATACGGTTTTGAGGATGGGGTGATAGCATGCTGTGGACATGGTGGGAAATACAACTACAATGATACAGAGAGATGTGGAGCAACCAAGATGGTTAATGGGATAGAGATTGTGATAGCCAATTCGTGCAAAGATCCAAGTCTGAGGATTATTTGGGACGGAATCCATTACACTGAAGCTGCTAATAATTGGATCTTTCAACAAATACTCAATGGCTCCTTTTCAGATCCACCTAACTCTTTTGAAGGGGCTTGTTATGGTAATTCATCCATTAGGTGA 1182 0.456 MNEMKVMEAVGEKWIKIVTSVILISLMRSGSGSECSFPAIFNLGDSNSDTGGLSAAFGQAPPPNGITYFHSPHGRFSDGRLIVDFIAERSGLGYLSAYLDSVGSNFSHGANFATAGSTVRPQNTTKSQSGYSPISLDVQFRQFSDFKARSKLVRQQGGVFKELLPKEEYFSQALYTFDIGQNDITAGYKLNFTTQQVKAYIPDVLAQFSNVIKGVYGEGGRSFWIHNTGPLGCLPYMLDRYPMKPPQMDDFGCAKPFNQVAQFFNRKLKQVVQQLRQELPEASITYVDVYTVKYTLISHAQKYGFEDGVIACCGHGGKYNYNDTERCGATKMVNGIEIVIANSCKDPSLRIIWDGIHYTEAANNWIFQQILNGSFSDPPNSFEGACYGNSSIR 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1948 393 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 29 386 - -
Aed5g1948 393 PANTHER BNAA06G32900D PROTEIN 29 386 - -
Aed5g1948 393 SUPERFAMILY SGNH hydrolase 43 372 - -
Aed5g1948 393 CDD SGNH_plant_lipase_like 38 374 IPR035669 -
Aed5g1948 393 Coils Coil 265 285 - -
Aed5g1948 393 Pfam GDSL-like Lipase/Acylhydrolase 40 370 IPR001087 GO:0016788
Aed5g1948 393 Gene3D SGNH hydrolase 28 374 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1948 Aed-Chr5 22451116 22453334 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1948 38 377 Acyl Lipid Metabolism Gene Families AT4G10950 28.977 1.68e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1948 - - gmx:100803899 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1948 5 22451116 22453334 Aed5g1948 5 22451116 22453334 ECH