Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1942 ATGAATCAAGCAAAGAGCAGCATTGGCGCATACCGCTCTCAGATATCGAAGTTGGTAAAAGCGGGTCTCATCAACCAAGCCATCCACCTGTTCGATCAAATGACCGAATCCAATTGCCGCGTCTTCAGCGTCGACTACAACCGCTTCATCGGCGTTCTCCTCCGCCACTCCCGCCTCCACCTCGCCCACCACTACTACCGCCGCCACGTCATCCCTCGCGGCTTCTCCCTCCTCCCCTTTACCTACTCCCGCTTCATCTCCGCCCTCTGCTCCGCCCCCAACACCCTCCCCCTCATCCACAGCCTCCTCCTCGACATGGACGCATTGGGCTTCGTCCCCGACATTTGGGCCTTTAACACTTACCTTAACCTCTTGTGCCGCCAAAATCGCTTAGAAACCGCCCTCGAACTCTTCCACTCCAAGGGAAGAGACCCCGACGTCGTTTCCTACACTATCATCGTCGACGCCTTGTGCAAAGCTAAACGCTTTGACGAGGCTGCTAGGGTTTGGCGCCGTTTGATTGACAAAGGGTTGAGCCCTGATTATAAAGCCTGCGTTGCTCTTGTTGTTGGGTTGTGCGGTGGCGGCCGTGTTGATTTGGCTTATGAGCTTATTGTTGGTGTGATCAAGGGTGGGGTGAAGGTTAACAGCCTGGTTTATAATGCTTTGATTGATGGGTTTTGTAGGATGGGGAGGGTTGATAAGGCCTTGAAGATTAAGACCTTTATGGGCCGTAACGGCTGTGTGCCGGACTTGATTACTTATAACATACTGTTGAATTACTGTTGTGATGAGGGGATGGCGGATGAGGCCGTGAAGTTGGTGGAGACCATGGAGAGGAGTGGGGTCGAGCCGGATTTGTATAGCTATAACGAGCTGTTGAAAGGTTTTTGCAAGGCCAATATGGTGGATAGGGCTTATTTGATGATGGTGGAGAGGATGCAGACCAGAGGGATGTGTGATGTTGTTTCATATAATACTGTCATCACGGCCTTCTGTAAGATGCGCCGGACTATGAGGGGTTATGAGTTGTTTGAGGAAATGTGTGGGAAGGGGATTAGGCCGGACATGGTGACTTTTAATATACTTATAGACGCCTTTCTGAGGGAAGGAAGTACCAGTGTGGTTAAGAAGTTGCTTGATGAAATGACAAGGATGTGTGTTCTCCCCGATCGTATATTCTACACTTCAGTAGTTGATCATCTGTGCAAGAATGGTAAGGTTGATGTGGCTCATAGTGTTTTTCGTGACATGGTTGAGAATGCAGTATATCCAGATGTCATCTCTTACAATGCACTTGTAAATGGGTTTTGTAAGGCTTCTAGAGTTATGGATGCCATGCGTCTATATGATGAAATGCAGAGGAAAGGTTTGTACCCTGATGAGGTAACTTACAAGTTGATAGTTGGAGGGCTTATAAGGGAAAAAAAGATTTCACTGGCCTGTGGGGTCTGGGATCAGATGATGGAGAAAGGCTTTACACTTGACAGACATCTTTCAGAGACTCTAGTCAATGCCATTCAATCAACTTGGAACTTCAAACTTTTCCAAAGAAATGTCACCGTGATCATTACATTTATTCAAAGTTGCATAGTGTTTCTGAAGGCTGCTGAATCAATGGAGACGGACAGAAAACTGCCATATCTTATGTTACTAGATTCTACCGAAGGCAATGTTGCACCTTGGAACAAGAGTAGCTGA 1701 0.4768 MNQAKSSIGAYRSQISKLVKAGLINQAIHLFDQMTESNCRVFSVDYNRFIGVLLRHSRLHLAHHYYRRHVIPRGFSLLPFTYSRFISALCSAPNTLPLIHSLLLDMDALGFVPDIWAFNTYLNLLCRQNRLETALELFHSKGRDPDVVSYTIIVDALCKAKRFDEAARVWRRLIDKGLSPDYKACVALVVGLCGGGRVDLAYELIVGVIKGGVKVNSLVYNALIDGFCRMGRVDKALKIKTFMGRNGCVPDLITYNILLNYCCDEGMADEAVKLVETMERSGVEPDLYSYNELLKGFCKANMVDRAYLMMVERMQTRGMCDVVSYNTVITAFCKMRRTMRGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTSVVKKLLDEMTRMCVLPDRIFYTSVVDHLCKNGKVDVAHSVFRDMVENAVYPDVISYNALVNGFCKASRVMDAMRLYDEMQRKGLYPDEVTYKLIVGGLIREKKISLACGVWDQMMEKGFTLDRHLSETLVNAIQSTWNFKLFQRNVTVIITFIQSCIVFLKAAESMETDRKLPYLMLLDSTEGNVAPWNKSS 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1942 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Aed5g1942 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Aed5g1942 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Aed5g1942 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Aed5g1942 566 Pfam PPR repeat 387 419 IPR002885 -
Aed5g1942 566 Pfam PPR repeat 141 172 IPR002885 -
Aed5g1942 566 Pfam PPR repeat 212 239 IPR002885 -
Aed5g1942 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Aed5g1942 566 Pfam PPR repeat family 250 299 IPR002885 -
Aed5g1942 566 Pfam PPR repeat family 425 473 IPR002885 -
Aed5g1942 566 Pfam PPR repeat family 321 368 IPR002885 -
Aed5g1942 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Aed5g1942 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 317 IPR002885 -
Aed5g1942 566 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 5 510 - -
Aed5g1942 566 Gene3D Tetratricopeptide repeat domain 68 207 IPR011990 GO:0005515
Aed5g1942 566 Pfam PPR repeat 117 139 IPR002885 -
Aed5g1942 566 Pfam PPR repeat 15 39 IPR002885 -
Aed5g1942 566 Gene3D Tetratricopeptide repeat domain 349 421 IPR011990 GO:0005515
Aed5g1942 566 Gene3D Tetratricopeptide repeat domain 422 494 IPR011990 GO:0005515
Aed5g1942 566 Gene3D Tetratricopeptide repeat domain 279 348 IPR011990 GO:0005515
Aed5g1942 566 Gene3D Tetratricopeptide repeat domain 208 278 IPR011990 GO:0005515
Aed5g1942 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 7 41 IPR002885 -
Aed5g1942 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Aed5g1942 566 TIGRFAM PPR: pentatricopeptide repeat domain 288 319 IPR002885 -
Aed5g1942 566 TIGRFAM PPR: pentatricopeptide repeat domain 219 251 IPR002885 -
Aed5g1942 566 TIGRFAM PPR: pentatricopeptide repeat domain 358 391 IPR002885 -
Aed5g1942 566 TIGRFAM PPR: pentatricopeptide repeat domain 253 286 IPR002885 -
Aed5g1942 566 TIGRFAM PPR: pentatricopeptide repeat domain 148 181 IPR002885 -
Aed5g1942 566 TIGRFAM PPR: pentatricopeptide repeat domain 395 427 IPR002885 -
Aed5g1942 566 TIGRFAM PPR: pentatricopeptide repeat domain 323 356 IPR002885 -
Aed5g1942 566 TIGRFAM PPR: pentatricopeptide repeat domain 428 462 IPR002885 -
Aed5g1942 566 TIGRFAM PPR: pentatricopeptide repeat domain 463 496 IPR002885 -
Aed5g1942 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Aed5g1942 566 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 5 510 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1942 105 518 Glycosyltransferase AT1G05670 29.206 1.94e-57 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1942 - - gmx:100801230 900.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1942 5 22422364 22425788 Aed5g1942 5 22422364 22425788 ECH