Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1933 ATGGATCCCTCTACATACGGTCCAGCTGTAGTCATCGATAATGGCTCCGGGTACCCCTTTCCTCCATTTCTATCACCCAATTTCCCTTCAACGCAATTTCTGGACACCATGTGTTTGTTGAAATGCCCCCAGTATACTAAGATGGGGTTTGCTGGTAATGTTGAGCCATGTTTTATTGTTCCGACAGTAGTTGCAGTTAACGAGTCTTTTCTTAATCCATCGAGGAACTCTTCTAAAGGAAATTGGGTTGCCCAGCACAATGCTGGTGTGATGGCGGATCTTGATTTCTTCATTGGGGATGAAGCACTTTCCAAGTCTCGATCTAGCAGCACTTATACTCTCACCTACCCAATTCAACAGGGCCAGGTTGAGAATTGGGATGCCATGGAGCGCTTCTGGCAGCAGTGCATTTTCAACTATTTGAGGTGTGATCCGGAGGATCACTATTTTCTCTTGACTGAGAGTCCATTGACATCGCCTGAGAGTCGCGAGTATACCGGGGAAATCATGTTTGAGACTTTCAACGTACCTGGACTTTACATTGGTGTCAATTCCGTGCTTGCTCTTGCAGCTGGTTACACAGCATCCAAGTGTGAGATGACAGGAGTTGTAGTGGATGTGGGAGATGGGGCTGCTCATGTTGTACCCGTTGCAGACGGCTATGTTATTGGTAGTAGCATCAAATCGATTCCTATTTCTGGAAAGGATATTACTCTTTTTGTGCAGCAGCTTATGCGGGAAAGAGGAGAGAATGTACCACCAGATGACTCTTTTGAAGTGGCACGGAAAGTGAAGGAAATGCATTGCTACACCTGCTCTGACATTGTGAAGGAATTTAATAAGCATGACAAAGAGCCAGCCAAGTATATCAAGCATTGGAGAGGCATTAAACCAAAGACTGGGGCACCATATACCTGTGATATTGGCTATGAACGATTTCTTGGCCCTGAGATTTTCTTTAATCCTGAGATATATGGCAGTGACTTTACCACCCCTTTGCCAGTTGTAATAGACAAGTGCATTCAGTCTGCGCCAATTGACACAAGGAGATCATTATACAAGAATGTAGTGTTGTCTGGAGGTTCAACCATGTTCAAGGATTTTCACAGGAGGTTGCAACGTGATCTAAAAAAAATAGTGGATACTCGTTCTGAAGCACGCTTAAATGGGGAAATAAAATCGCAGCCAGTGGAGGTAAATGTACTCAGCAATCCAATCCAGAGATTTGCAGTTTGGTTTGGAGGATCAGTTCTTGCATCAACACCTGAATATTTTACGGCTTGTCATACAAAGGCAGAATATGAGGAGTATGGAGCAAGCATTTGCCGGACAAATCCTGTTTTCAAGGGAATGTATTAA 1359 0.4408 MDPSTYGPAVVIDNGSGYPFPPFLSPNFPSTQFLDTMCLLKCPQYTKMGFAGNVEPCFIVPTVVAVNESFLNPSRNSSKGNWVAQHNAGVMADLDFFIGDEALSKSRSSSTYTLTYPIQQGQVENWDAMERFWQQCIFNYLRCDPEDHYFLLTESPLTSPESREYTGEIMFETFNVPGLYIGVNSVLALAAGYTASKCEMTGVVVDVGDGAAHVVPVADGYVIGSSIKSIPISGKDITLFVQQLMRERGENVPPDDSFEVARKVKEMHCYTCSDIVKEFNKHDKEPAKYIKHWRGIKPKTGAPYTCDIGYERFLGPEIFFNPEIYGSDFTTPLPVVIDKCIQSAPIDTRRSLYKNVVLSGGSTMFKDFHRRLQRDLKKIVDTRSEARLNGEIKSQPVEVNVLSNPIQRFAVWFGGSVLASTPEYFTACHTKAEYEEYGASICRTNPVFKGMY 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1933 452 Gene3D Actin; Chain A, domain 4 232 330 - -
Aed5g1933 452 PANTHER ACTIN-RELATED PROTEIN 3-LIKE 45 445 - -
Aed5g1933 452 SUPERFAMILY Actin-like ATPase domain 200 447 IPR043129 -
Aed5g1933 452 SMART actin_3 7 447 IPR004000 -
Aed5g1933 452 CDD NBD_sugar-kinase_HSP70_actin 115 252 - -
Aed5g1933 452 Gene3D - 185 410 - -
Aed5g1933 452 SUPERFAMILY Actin-like ATPase domain 44 192 IPR043129 -
Aed5g1933 452 Gene3D - 44 438 - -
Aed5g1933 452 PANTHER ACTIN 45 445 IPR004000 -
Aed5g1933 452 Pfam Actin 44 443 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1933 Aed-Chr5 22381595 22386011 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1933 47 442 Miscellaneous Gene Families AT2G42100 33.838 8.58e-70 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1933 K18584 - gmx:100780462 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1933 5 22381595 22386011 Aed5g1933 5 22381595 22386011 ECH