Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1928 ATGTCTATGCCATTGCCACGTATAGTTATTACATGCAGCAGTGTTGAAGTTGATGATGAGTACCAGCCCCTCACAGTCACACTCATCATAATCTCATGCCTCGGTTTGATCGTCACATTGAACCGTCTCATCTCCTTCTTCGCATGGATCTTCCGAACCTGTTTCCGATCCGAGAAGAATCTCCTCCGAAGCTACGGCTCCTGGGCTCTGGTCACCGGAGCCACCGACGGCATCGGAAGAGCCTTCGCCGAGCAACTAGCGCAGAGAGGCCTCAACCTCATTCTCGTCAGCAGAACCTTTCAGAAGCTCAAAACCGTTGCGGGGGAAATCAAAGCGAAACACCCCGGCACGCGCGTGAAGGTCGTCGAGATGGACTTCACCGGCGCCGGTGGAGAGGTGTCGGAGGATCTACGGCGCGTGGAGGAGGCGAGTGAGGGTTTGGACATTGGCGTTTTGGTGAACAACGTGGGGATCACGTACCCGAGGGCGATGTTCTTTCACGAAGTCGAGGAGAAGGTGTGGAGGAACATTGTTAAGGTCAACGTGGAAGGAACAACGAGAGTAACTAAATGTGTTTTGCGTGGGATGTTACATAGGAGAAAGGGTGCGATTGTTAACATTGGATCTGGTGCTTCTGTGGTTGTGCCTTCTCATCCTCTCTTTTCCATCTATGCTGCCACTAAGGCTTACGTGGACCAGTTATCAAGATCTCTGTACGTCGAGTATGGACAATACGGGATTCATGTGCAATGTCAGGTACCACTGTACGTTGCAACGAATATGGTATCAAAGGTTGCATGTATTAAGAGAGATTCATTGTTTGTACCAACAGCTGAGGCATATGCAAGAGCTGCAATTGGTGAAATTGGGTACCAACCAAGGTGCACACCTTATTGGGCTCACTCAATTCAGTGGTGTTTCGCTAACTTAATCCCTGATTCACTACTTGATTCTTGGCGCTTGTCCATTGGTATGCACCGCAGGAGCAGTAACAATCAAAAGGGAGACTCAGTTAATTAA 1020 0.4951 MSMPLPRIVITCSSVEVDDEYQPLTVTLIIISCLGLIVTLNRLISFFAWIFRTCFRSEKNLLRSYGSWALVTGATDGIGRAFAEQLAQRGLNLILVSRTFQKLKTVAGEIKAKHPGTRVKVVEMDFTGAGGEVSEDLRRVEEASEGLDIGVLVNNVGITYPRAMFFHEVEEKVWRNIVKVNVEGTTRVTKCVLRGMLHRRKGAIVNIGSGASVVVPSHPLFSIYAATKAYVDQLSRSLYVEYGQYGIHVQCQVPLYVATNMVSKVACIKRDSLFVPTAEAYARAAIGEIGYQPRCTPYWAHSIQWCFANLIPDSLLDSWRLSIGMHRRSSNNQKGDSVN 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1928 339 PIRSF 11-beta-HSD1 19 334 - -
Aed5g1928 339 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 66 284 IPR036291 -
Aed5g1928 339 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Aed5g1928 339 Gene3D - 60 290 - -
Aed5g1928 339 PRINTS Glucose/ribitol dehydrogenase family signature 147 158 IPR002347 -
Aed5g1928 339 PRINTS Glucose/ribitol dehydrogenase family signature 68 85 IPR002347 -
Aed5g1928 339 PRINTS Glucose/ribitol dehydrogenase family signature 196 212 IPR002347 -
Aed5g1928 339 PRINTS Glucose/ribitol dehydrogenase family signature 224 243 IPR002347 -
Aed5g1928 339 PRINTS Glucose/ribitol dehydrogenase family signature 245 262 IPR002347 -
Aed5g1928 339 Pfam short chain dehydrogenase 68 265 IPR002347 -
Aed5g1928 339 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 224 243 IPR002347 -
Aed5g1928 339 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 158 IPR002347 -
Aed5g1928 339 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 202 210 IPR002347 -
Aed5g1928 339 CDD 17beta-HSD1_like_SDR_c 66 312 - -
Aed5g1928 339 PANTHER RH59310P 27 331 - -
Aed5g1928 339 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 27 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1928 Aed-Chr5 22359451 22363546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1928 19 329 Lipid Metabolism Gene Families AT1G24470 55.769 4.50e-125 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1928 K10251 - mnt:21410235 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1928 5 22359451 22363546 Aed7g1898 7 22096447 22098903 PCT