Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1276 ATGCCATCATCCACTCCGAAACCACCCCTAATATCCCCTTTCCGACTCACCTCCCTCCTCCGCTCCACCAAAGACCCAACCCAAGCCCTCCAACTCTTCCTCAACCCTAACCCCACCGCCACCACGCGCCGCCCCTTCCGCCACTCCCTCCGCTCCTACGACCTCCTCATAACCAAACTCGCAAACGCCAAAATGTTCCCCCAAATGGAACACATCCTCCACCGCCTCCAATCCCAAACCCACTTCCCAGTCCCAGAACCCCTCCTCTGCCACGTCATCTCCTCCTACTCACGCGCCCGCCTCCCCTCACGCGCCCTCACTCTCTTCCTCTCCTTCCCCTCCTTCCGCTGCACCCCAACCCTCAAATCCCTCAACACCCTCCTCCACGCGCTCCTCATCTGCCGCGACCTCCCCTCCCTCACGCGCCTCTCCTCCCACTTCCCCTTCTCCCCCGACGCCTGCACCTTCAACATCCTCATCCGCGCGTCCTCCAACAACCTCGCCCACGCGCGGAAACTCTTCCACGAAATGCGCACGCGCGGCATCCCCCCAACTCAAACCACGTTCGGGACTCTCATCACCATGCTCTGCAAAAACCCGCGTTCGAACCTAACAGAGGCGTTTCAACTGAAACAAGACATGGAGAGGGCTTTTAAAGTGAAACCCAATGTTTTCGTATACACCAATTTGATCAAAGCGGTTTGCGAGATCGGGGACTTCGATTGCGCGTTTAGGCTTAAGGATGAGATGGTGAGAAAAAGTTTGAAGCTTGATGCTGCGGTGTACAACACTCTGCTTTCCGCGGTTCTCAAAGCCGGGAATAAGGGTTTAGGATTTAGGGTTTTGGACGAGATGAAGAGTGTCGGCGTGAGGCCGGATTCGGTGACGTGTAATGTGCTGATTGGGGAGTCTTGTAGGGAGGGGAATTTGGAAGAGGCTTATAGGGTTCTGGAGGACGGGGTTGAAGGTGTGAAGCCTGATGTTTTCGGGTACAATGTGGTTATTGGATGGTTGTTTAAAGAGGGGAAGTGGAGGGAGGCGGATGATTTGTTCCGGGACATGCCGAGGCAGCGGTGTGTTCCGGATGTCGTGACGTACCGGACGGTGTTCGACGGGCTCTGCCGGTGGATGCAGTTTGAGGAAGCCGTGTTGGTTTTGGAGGAGATGGCTTTCAAAGGCTATGTTCCATGTTCCTCAAGTTTGAACGGGTTCATCGGCAGGTTGTGCCAGAGAGGGGATTTTGAGTTGTTGGGGAGGGTTTTGAGTGGTTTGGGTGGAGGGGGGTTTTGCAATGAGGATGTGTGGGAAACTGTGGTTTCCTTGGTTTGTAAGTTGGAAAAACCGTTGGGGGATTCTGAGCTTTTTGATGCATTGGTGTTGGCATGA 1386 0.5505 MPSSTPKPPLISPFRLTSLLRSTKDPTQALQLFLNPNPTATTRRPFRHSLRSYDLLITKLANAKMFPQMEHILHRLQSQTHFPVPEPLLCHVISSYSRARLPSRALTLFLSFPSFRCTPTLKSLNTLLHALLICRDLPSLTRLSSHFPFSPDACTFNILIRASSNNLAHARKLFHEMRTRGIPPTQTTFGTLITMLCKNPRSNLTEAFQLKQDMERAFKVKPNVFVYTNLIKAVCEIGDFDCAFRLKDEMVRKSLKLDAAVYNTLLSAVLKAGNKGLGFRVLDEMKSVGVRPDSVTCNVLIGESCREGNLEEAYRVLEDGVEGVKPDVFGYNVVIGWLFKEGKWREADDLFRDMPRQRCVPDVVTYRTVFDGLCRWMQFEEAVLVLEEMAFKGYVPCSSSLNGFIGRLCQRGDFELLGRVLSGLGGGGFCNEDVWETVVSLVCKLEKPLGDSELFDALVLA 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1276 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Aed5g1276 461 Gene3D Tetratricopeptide repeat domain 166 321 IPR011990 GO:0005515
Aed5g1276 461 Gene3D Tetratricopeptide repeat domain 17 165 IPR011990 GO:0005515
Aed5g1276 461 TIGRFAM PPR: pentatricopeptide repeat domain 156 185 IPR002885 -
Aed5g1276 461 TIGRFAM PPR: pentatricopeptide repeat domain 331 363 IPR002885 -
Aed5g1276 461 TIGRFAM PPR: pentatricopeptide repeat domain 261 294 IPR002885 -
Aed5g1276 461 TIGRFAM PPR: pentatricopeptide repeat domain 364 396 IPR002885 -
Aed5g1276 461 TIGRFAM PPR: pentatricopeptide repeat domain 226 258 IPR002885 -
Aed5g1276 461 Pfam Pentatricopeptide repeat domain 245 302 IPR002885 -
Aed5g1276 461 Pfam PPR repeat family 151 198 IPR002885 -
Aed5g1276 461 Pfam PPR repeat family 326 375 IPR002885 -
Aed5g1276 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Aed5g1276 461 PANTHER OS05G0207200 PROTEIN 7 458 - -
Aed5g1276 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Aed5g1276 461 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 7 458 - -
Aed5g1276 461 Gene3D Tetratricopeptide repeat domain 322 448 IPR011990 GO:0005515
Aed5g1276 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1276 151 444 Glycosyltransferase AT1G05670 24.832 4.74e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1276 - - gmx:100781017 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1276 5 11932014 11933399 Aed5g1276 5 11932014 11933399 ECH