LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed5g1264	ATGGCGAACAGGAACTTGGAAAAGATGGCATCCATTGATGCTCAGCTTCGGCTGTTGGTTCCAGCCAAAGTGAGTGAGGATGACAAACTTGTTGAGTATGATGCTTTGCTCTTGGATCGGTTCCTTGATATTCTTCAGGACTTACATGGGGAGGATCTGAAAGAAACTGTTCAAGAGGTGTATGAGCTTTCTGCTGAGTATGAAGGGAAGCATGACCCAAAGAAACTCGAGGAACTTGGAAATCTGATAACTAGTTTGGATGCTGGAGATTCCATTGTTGTTGCCAAGTCCTTTTCCCACATGCTTAACTTGGCCAACTTGGCTGAAGAGGTCCAAATCGCGCACAGCCGAAGGATCAAGTTGAAGAAAGGAGATTTTGTAGATGAGAACAATGCCAACACTGAATCAGACATTGAAGAAACTCTCAAGAAACTTGTAGTGGATATGAAGAAGTCTCCTCAGGAAGTTTTTGAGGCACTGAAAAACCAGACTGTTGATCTTGTTCTTACTGCTCATCCTACTCAATCAGTTCGTAGGTCTTTGCTGCAAAAGCATGGAAGGATAAGAAATAATCTAACTCAGTTGTATGCCAAAGACATTACTCCTGATGATAAGCAGGAACTTGATGAGGCTCTACAGAGGGAGATTCAAGCTGCATTCCGTACTGATGAAATCAGGAGGACCCCTCCAACCCCACAAGATGAGATGAGAGCAGGGATGAGTTACTTCCATGAAACAATCTGGAAGGGTGTACCCACATTTCTTCGTCGTGTTGATACAGCTTTGAAGAATTTAGGGATCAATGAACGTGTCCCTTATAATGCTCCTCTCATTCAATTTTCTTCTTGGATGGGTGGAGATCGTGATGGCAATCCAAGAGTGACTCCTGAAGTGACCAGAGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAATTTGTACTATTCCCAGATAGAGGATCTCATGTTTGAACTGTCAATGTGGCGCTGCAACGACGAGCTACGTGTCCGTTCTGACGAACTCAACAGGACTTCCAAGAAAAATTCAGTTGCAAAACACTACATAGAATTTTGGAAAGTCATTCCTCCAAATGAACCATATCGTGTGCTACTGGGTGAAGTAAGGGATAGGCTTTACCAGACTCGAGAGCGCTCGCGCCATTTGCTAGCTCATGGCTACTCTGACATTCCAGAGGAAGAAACTTTCACCAATGTTGAGGAGATCACTCTGTGCTTGTGGCGACCGTGCAATTGCCGATGGAAGCCTTCTAGATTTCTTGAGACAATGAGGCTCGACATAAGGCAGGAGTCGGACCGCCACACTGACGTCTTGGACGCCATCACAAAGCATTTGGAAATAGGATCATACCAGGAATGGTCTGAGGAAAAACGGCAGCAATGGCTTTTATCCGAGTTGAGTGGCAAAAGGCCTTTATTTGGCTCTGACCTTCCCCAAACTGAAGAAATCAAAGACGTTTTGGAAACATTCCATGTCATAGCAGAGCTTCCTCCAGACAACTTTGGAGCATACATCATCTCAATGGCAACTGCACCATCTGATGTGCTAGCAGTCGAGCTTCTGCAGCGCGAATGCCATGTCAAGCATCCACTGAGAGTTGTTCCATTGTTTGAGAAGCTAGATGATCTGGAAGCAGCACCGGCCGCATTGGCGAGGCTGTTCTCCGTGGACTGGTACAGAAACAGGATCAATGGGAAGCAGGAAGTGATGATAGGCTACTCTGATTCAGGCAAAGATGCTGGGAGGTTCTCGGCTGCATGGCAGCTTTATAAGGCTCAGGAGGAGCTCATAAATGTGGCTAAGGAGTATGGTGTGAAGCTAACAATGTTCCACGGCCGTGGAGGGACGGTTGGAAGAGGAGGTGGTCCAACTCACCTTGCTATTCTGTCTCAGCCTCCGGATACCATCCACGGATCGCTGCGTGTGACTGTCCAAGGTGAAGTCATTGAGCAATCCTTTGGAGAGCAACAATTGTGCTTCAGAACGCTTCAGAGGTTCACTGCAGCCACTCTAGAACATGGAATGCACCCTCCAATCGCTCCTAAACCGGAATGGAGGGCTTTGATGGATGAAATGGCTGTGATCGCCACTGAGGAGTACCGGTCCATTGTGTTCAAAGAACCACGCTTTGTTGAGTATTTCCGCCTGGCCACACCTGAGTTGGAGTATGGAAGGATGAACATTGGAAGTCGACCAGCGAAGAGGAGGCCAAGTGGAGGCATCGAGACACTGCGAGCAATCCCTTGGATCTTTGCCTGGACACAGACAAGGTTCCATCTTCCAGTGTGGCTAGGCTTTGGTGCTGCATTCAAACATGTTATTGGGAAGGATGTTAGGAATATTCATGTGCTGCAGGAGATGTACAATCAATGGCCTTTCTTTAGGGTCACTATTGATTTAGTGGAAATGGTGTTTGCCAAAGGAGACCCAGGGATTGCTGCTCTTTATGATAAGCTCCTTGTTTCAAAGGATCTGTGGCCTTTTGGGGAGCAGTTGAGGACCAAGTATGAAGAAACCAAGGAACTCCTCCTTCAGGTGGCTGGCCATAGGGATCTTCTTGAAGGAGATCCATACCTGAAGCAAAGACTCCGGCTGCGTGATTCATACATCACAACCCTAAATGTGTGCCAAGCCTACACCCTGAAACGAATCCGCGATCCAAACTACAATGTGAAGCTGCGGCCTCACATCTCCAAAGAGTCCATAGAGATAAGCAAACCTGCTGATGAACTCATAACACTCAACCCAACAAGTGAGTATGCACCTGGTTTGGAAGACACACTCATTCTCACCATGAAGGGCATTGCTGCTGGCTTGCAAAACACTGGCTAG	2850	0.4691	MANRNLEKMASIDAQLRLLVPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYEGKHDPKKLEELGNLITSLDAGDSIVVAKSFSHMLNLANLAEEVQIAHSRRIKLKKGDFVDENNANTESDIEETLKKLVVDMKKSPQEVFEALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNNLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPTFLRRVDTALKNLGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCNDELRVRSDELNRTSKKNSVAKHYIEFWKVIPPNEPYRVLLGEVRDRLYQTRERSRHLLAHGYSDIPEEETFTNVEEITLCLWRPCNCRWKPSRFLETMRLDIRQESDRHTDVLDAITKHLEIGSYQEWSEEKRQQWLLSELSGKRPLFGSDLPQTEEIKDVLETFHVIAELPPDNFGAYIISMATAPSDVLAVELLQRECHVKHPLRVVPLFEKLDDLEAAPAALARLFSVDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELINVAKEYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEQQLCFRTLQRFTAATLEHGMHPPIAPKPEWRALMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPAKRRPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIGKDVRNIHVLQEMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDKLLVSKDLWPFGEQLRTKYEETKELLLQVAGHRDLLEGDPYLKQRLRLRDSYITTLNVCQAYTLKRIRDPNYNVKLRPHISKESIEISKPADELITLNPTSEYAPGLEDTLILTMKGIAAGLQNTG	949

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed5g1264	949	ProSitePatterns	Phosphoenolpyruvate carboxylase active site 2.	575	587	IPR033129	-
	Aed5g1264	949	ProSitePatterns	Phosphoenolpyruvate carboxylase active site 1.	168	179	IPR018129	-
	Aed5g1264	949	PANTHER	PHOSPHOENOLPYRUVATE CARBOXYLASE	1	949	-	-
	Aed5g1264	949	PANTHER	PHOSPHOENOLPYRUVATE CARBOXYLASE	1	949	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Aed5g1264	949	PRINTS	Phosphoenolpyruvate carboxylase signature	615	644	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Aed5g1264	949	PRINTS	Phosphoenolpyruvate carboxylase signature	280	295	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Aed5g1264	949	PRINTS	Phosphoenolpyruvate carboxylase signature	167	180	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Aed5g1264	949	PRINTS	Phosphoenolpyruvate carboxylase signature	424	444	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Aed5g1264	949	PRINTS	Phosphoenolpyruvate carboxylase signature	220	236	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Aed5g1264	949	PRINTS	Phosphoenolpyruvate carboxylase signature	573	593	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Aed5g1264	949	PRINTS	Phosphoenolpyruvate carboxylase signature	747	773	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Aed5g1264	949	Pfam	Phosphoenolpyruvate carboxylase	427	949	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Aed5g1264	949	Pfam	Phosphoenolpyruvate carboxylase	36	409	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Aed5g1264	949	Gene3D	Phosphoenolpyruvate/pyruvate domain	308	434	-	-
	Aed5g1264	949	SUPERFAMILY	Phosphoenolpyruvate/pyruvate domain	33	949	IPR015813	GO:0003824
	Aed5g1264	949	Hamap	Phosphoenolpyruvate carboxylase [ppc].	23	949	IPR022805	GO:0006099\|GO:0008964\|GO:0015977

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed5g1264	Aed-Chr5	11714511	11722559	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed5g1264	K01595		-	gmx:547769	1791.16

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed5g1264	5	11714511	11722559	Aed5g1264	5	11714511	11722559	ECH
	Aed1g0534	1	6925563	6931892	Aed5g1264	5	11714511	11722559	PCT
	Aed5g1264	5	11714511	11722559	Aed1g0755	1	8574827	8580904	PCT