Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1224 ATGAGAAGCATTATTTTCATTATTCTTTTATGGCTAGTAACACTTAAAGCTGAAAGCCGTGCCCTTCAAATTATAAGTTCTTCTGAGTTGTTGGTGTCTGATGGAATTGATCATGATGCTCATAATCAAACTGAAAACTCTGATTACTTGTATGATCTCAAGGGGAGTGATCATGAAGAATCTTACTACTGTGAACAAATGTATGGCTTTCTGCCATGTTCTAATAACATTTTTGGTCATGTCTTTCTAATTTTGGTTTATGAGTACTTGTTATTCCATGGGGAATCATACTTAGCTACTGGAGGGGAACATGTCTTCAATATTCTTGGCCCTGGCATCCTTGGTGCCAGTGTCTTTGATATTCTTGTTACTGGACTTTCTAGTGATAAAGAGAGGGCACAAGAGTATGCTTCAACTGGAGTTGGCTTGTTGGCTGGATCATCCATCTTGCATCTTACTGTAGTGTGGGGAACATGTGTTATCGTTGGCAGTCAAAAAATCTCAAATAATTCATTGTTCTTGCATTACGATGAGTATAGGAAGATGGCAAAAATTATGGTTTGCTCAATTGTGCCACTCATCATAATGCAGATTTCCACTTTATTACAGTCCTCTTACACCCCACGCTCTGTGACATTGATCATTGCTTTTATCGTTGCTGTCATTTTCCTCATCTCATATTTCATCTACCAGATTTTTGAACCCCAAATAGAGACAGCGAGACTAGAATATATAAAACATGGTCATCTAATATTAAAAATATTTCGTCAAGTTGAAGAGAAAAATCTGAAAAGCATCCTCTCCGAGGATGGCACTCCCAATGAATCAGCCATAACCAGGCTATATAATGAAATCAATCCAAATGGGGACAAGGATATGTTACATTCTGAAATAAAAGAGCTACTTCTGAACAAATCAACTGAAACAAATATCAAAGATAATGAACAAATAGAAAGCATGTTAAGAATTTTTGACGAAAATGGTGACAATGTTATATCCAAGAAGGAATTTGTCAAAGGCTTCACGAGATATATTAACGAAACCAAGGATGCTGTGGACATGAAGTTACTCCCCAAAAAATCTCTGAACAACATGTTTCAGGTTTTAATCAAGCCATGGATGGAACAGAAAAGGAATGAACGTAAATTGAAGGGAGATGTTATATCTGAAGTCTTCAGGCATGTTCAAGGTGATATATTTGGCCAGCTTTGCAAAGAAGATGACACACCTGATGAATCTACTATCAAAAGATCTGAGTTTGAAAAGAGACTCAAGGGCATTCAGTTGACTAATGCAGAGGTGGCAGTTACAAAAATGTTTGAAGAACTCGACCTTAACAGAGACAATGAATTAAGTGAGAATGAATTTGTTGATGGATTTACAAAATTGCTAAAAACAAAAAATTCCACTCAACCTCCTCCCTCAACATCTCTGCAGATTCATGAAAATCAAACCTGGAAAGATGTTGAAAAGTTGGTGAAAGGTAATCAGAAGAATGGAGTGTATGCATGGTTGAATGCTTTGGGATATGTTGTGTTTGGAATTACTATATTGTCTCTTCTTGCTGAGCCCTTAATAGAAATTGTCCAGAAATTCTCTAAAGAGGCAGGAATTCCCTCTTTTTTCATCTCATTTATTTTAGTCCCACTGGCCACAAATTTTAGAGAAGCAACCTCAGCCATCAGAGAAGCTAGCCATAAGAAGAGAGGCAATACTTCCAAAACAATTTATGAGATTTATGGAGCAGTGTTCATGAACAATATTCTTGGTTTTGTGGTGGTCTCCATTCTTATATATGTGCGAGATATCACTTGGCAATTCTCAGCTGATGTACTGGTTGTGGCAATTGTTTGTGCTGTTATGGGCATTACGGCATCGTTTCGCTCCTCTTTCCCTTCATGGACAGCATATCCTGCATATCTTTTGTACCTGCTGTCATTAGTTTTGGTTCTGGTTCTCAAATATCTTCTAAACTATGTTTAA 1983 0.3712 MRSIIFIILLWLVTLKAESRALQIISSSELLVSDGIDHDAHNQTENSDYLYDLKGSDHEESYYCEQMYGFLPCSNNIFGHVFLILVYEYLLFHGESYLATGGEHVFNILGPGILGASVFDILVTGLSSDKERAQEYASTGVGLLAGSSILHLTVVWGTCVIVGSQKISNNSLFLHYDEYRKMAKIMVCSIVPLIIMQISTLLQSSYTPRSVTLIIAFIVAVIFLISYFIYQIFEPQIETARLEYIKHGHLILKIFRQVEEKNLKSILSEDGTPNESAITRLYNEINPNGDKDMLHSEIKELLLNKSTETNIKDNEQIESMLRIFDENGDNVISKKEFVKGFTRYINETKDAVDMKLLPKKSLNNMFQVLIKPWMEQKRNERKLKGDVISEVFRHVQGDIFGQLCKEDDTPDESTIKRSEFEKRLKGIQLTNAEVAVTKMFEELDLNRDNELSENEFVDGFTKLLKTKNSTQPPPSTSLQIHENQTWKDVEKLVKGNQKNGVYAWLNALGYVVFGITILSLLAEPLIEIVQKFSKEAGIPSFFISFILVPLATNFREATSAIREASHKKRGNTSKTIYEIYGAVFMNNILGFVVVSILIYVRDITWQFSADVLVVAIVCAVMGITASFRSSFPSWTAYPAYLLYLLSLVLVLVLKYLLNYV 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1224 660 Pfam EF-hand domain pair 313 343 IPR002048 GO:0005509
Aed5g1224 660 Pfam EF-hand domain pair 417 462 IPR002048 GO:0005509
Aed5g1224 660 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 501 659 - -
Aed5g1224 660 ProSitePatterns EF-hand calcium-binding domain. 444 456 IPR018247 -
Aed5g1224 660 Pfam Sodium/calcium exchanger protein 116 225 IPR004837 GO:0016021|GO:0055085
Aed5g1224 660 Pfam Sodium/calcium exchanger protein 509 651 IPR004837 GO:0016021|GO:0055085
Aed5g1224 660 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 6 411 - -
Aed5g1224 660 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 6 411 - -
Aed5g1224 660 Gene3D - 231 342 - -
Aed5g1224 660 Gene3D - 347 470 - -
Aed5g1224 660 SUPERFAMILY EF-hand 278 463 IPR011992 -
Aed5g1224 660 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 366 480 - -
Aed5g1224 660 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 366 480 - -
Aed5g1224 660 ProSiteProfiles EF-hand calcium-binding domain profile. 431 466 IPR002048 GO:0005509
Aed5g1224 660 ProSitePatterns EF-hand calcium-binding domain. 325 337 IPR018247 -
Aed5g1224 660 ProSiteProfiles EF-hand calcium-binding domain profile. 312 347 IPR002048 GO:0005509
Aed5g1224 660 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 501 659 - -
Aed5g1224 660 SMART efh_1 316 344 IPR002048 GO:0005509
Aed5g1224 660 SMART efh_1 435 463 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1224 Aed-Chr5 10993871 11001067 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1224 365 659 EF-hand Containing Proteins AT1G53210 34.441 9.14e-46 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1224 - - gmx:100799062 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1224 5 10993871 11001067 Aed5g1224 5 10993871 11001067 ECH