LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed5g1220	ATGGACAAGGACAAGGACAACCCAATCTCCGGCGGCGAGTTCGAGTACCTTTCCGGGTTCGGCAACCACTTGTCCTCCGAGGCTCTCGCCGGAGCTCTGCCGGCGGCGCAGAACAGCCCTCTTCTCTGCCCGTACGGCCTCTACGCCGAACAAATCTCCGGCACCTCCTTCACCTCCCCTCGCAAGCAAAACCTCTTCAGTTGGTTTTATCGGATCAAACCATCAGTGACACACGAACCGTTCAAGCCTAGAGTACCTGGTAATGGGAGAATTTTGAGTGAGTTCAACAACTCCAAGAGTTCTGCTAACCCAACTCAGCTTAGATGGAAGCCCATGGACGAACCCGATTCGCCCACGGATTTCATTGATGGGTTGTCCACCATGTGTGGTTCTGGAAGCTCCTTCATGCGCAATGGATATGCTATTCACATGTACACTGCCAACAAATCAATGGAAAATTGTGCCTTTTGCAATGCTGATGGCGACTTCTTGATTGTTCCCCAACAAGGAAGACTCCTCATCACTACTGAATGTGGAAGGTTGAAAGTTTCTCCGGGTGAAATTGCTATACTACCTCAAGGTTTTCGTTTTTCTGTGAATCTGCCTGATGGTCCATCCCGTGGTTATGTTGCTGAAATTTTTGGTACTCATTTTCAACTTCCTGATCTTGGACCAATAGGTGCTAATGGTCTTGCTTCGCCACGGGATTTCCTTGTTCCTACTGCTTGGTTTGAAGATAAATCTTATCCTGGGTACACCATAGTGCAGAAGTTTGGTGGTGAACTCTTTGCTGCAGTACAAGATTTCTCTCCCTTCAATGTTGTTGCTTGGCATGGTAATTATGTTCCATGTAAGTATGATTTAAGAAAATTCTGCCCTTATAATACAGTTCTGTTTGATCACAGTGATCCATCAATCAATACTGTGTTGACAGCACCAACTGATAAACCTGGAGTGGCATTGCTTGATTTTGTCATTTTTCCACCCAGATGGCTGGTTGCTGAGCATACTTTCCGGCCTCCGTATTATCATCGCAATTGCATGAGTGAATTTATGGGCCTCATTCATGGTGGCTACGAGGCCAAGGTTGATGGATTTCTTCCGGGTGGTGCAAGTCTCCATAACTGTATGACTCCCCATGGTCCTGATACCAAGTCATATGAGGCTACCATTGCACGAGGAAATGATGTAGGACCTTGCAAGATCACTGACACAATGGCTTTCATGTTCGAATCGAGTTTGATACCGCGAATTAGTCAATGGGCACTAGAATCACCATTCTTGGATCCAGATTATTACCAGTGTTGGATTGGCCTGAAATCTCATTTTACAGATACTAAGACATCTCCAGAAAATCCGAGCTGA	1365	0.4623	MDKDKDNPISGGEFEYLSGFGNHLSSEALAGALPAAQNSPLLCPYGLYAEQISGTSFTSPRKQNLFSWFYRIKPSVTHEPFKPRVPGNGRILSEFNNSKSSANPTQLRWKPMDEPDSPTDFIDGLSTMCGSGSSFMRNGYAIHMYTANKSMENCAFCNADGDFLIVPQQGRLLITTECGRLKVSPGEIAILPQGFRFSVNLPDGPSRGYVAEIFGTHFQLPDLGPIGANGLASPRDFLVPTAWFEDKSYPGYTIVQKFGGELFAAVQDFSPFNVVAWHGNYVPCKYDLRKFCPYNTVLFDHSDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIHGGYEAKVDGFLPGGASLHNCMTPHGPDTKSYEATIARGNDVGPCKITDTMAFMFESSLIPRISQWALESPFLDPDYYQCWIGLKSHFTDTKTSPENPS	454

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed5g1220	454	PANTHER	HOMOGENTISATE 1,2-DIOXYGENASE	13	445	-	-
	Aed5g1220	454	Gene3D	Jelly Rolls	277	414	IPR014710	-
	Aed5g1220	454	Pfam	Homogentisate 1,2-dioxygenase C-terminal	289	443	IPR046451	-
	Aed5g1220	454	Pfam	Homogentisate 1,2-dioxygenase N-terminal	15	288	IPR046452	-
	Aed5g1220	454	TIGRFAM	hmgA: homogentisate 1,2-dioxygenase	14	443	IPR005708	GO:0004411\|GO:0006559\|GO:0006570
	Aed5g1220	454	PANTHER	HOMOGENTISATE 1,2-DIOXYGENASE	13	445	IPR005708	GO:0004411\|GO:0006559\|GO:0006570
	Aed5g1220	454	SUPERFAMILY	RmlC-like cupins	14	445	IPR011051	-
	Aed5g1220	454	CDD	cupin_HGO_N	107	215	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed5g1220	K00451		-	gmx:100801346	904.434

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed5g1220	5	10926384	10933126	Aed5g1220	5	10926384	10933126	ECH