Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1193 ATGAACACAACAAGTGAAGATAAGTCAAGGGTTAACCTTGCAGCCCAAGAGGGAGACATAGATGGTCTCTATACAGTGATTCAGGAGAATCCACATGTTTTGGAGGACATAGATTCGATACCATTTGTTGACACTCCTCTGCATGTTGCTGCATCTGTTGGAAAACTAGAATTTGCTACTGAGGTTATGACATTGAAACCTTCGTTCGCTTTGAAACTAAATCCACAGGGATTGACTCCCATCCACCTTGCTCTACAAAACGGGCATGAGAGAATGGTGCTCCACTTTGTATCTATCAACAAAGACCTGGTTCGAGTCAAAGGGAGGAAAGGCCGTACGGCACTACATTTGGCAAGTGAAAAAGGAGAAATTAAACTGTTGATTGAATTCCTCTTGGCTTGCCCAGATTGCATTGAAGATGTAACAGTTAGAAAGGAGACTGCATTGCACATTGCAGTGAGATGTGGACAGTATGAGACTCTTCAAGTCCTACTTGGTTGGCTTATGAAAACTAGCCATACAGGTGCTTTGAAGATGGAGAGAACAATATTGAACTGGAAAGATGTAGAAGGCAATACCGTTTTGCACCTTTCTTCGCGAGAAAATAACTTCCAGATGGTTGAGTTGTTGGTAAAGACAGCTAAGCTGAATTTAAATGCGAAGAATTATGAGGAAAGATCAGCTTTTGACGTAGCAACTAATCAAGAGATCAGAACTGTATTACTGAGGAGTGGAGCAAATTTGTCAGCTACTAATAATGTGGTCACCTATGCAAATACATTCAAATCAAAGATGACATTGAGGGATAAAATAACTACCTCTATTCGTCGCATTAGATGTGATATAACAGAGAACCAACGGAATATTTATCTGATAATATCTACTCTTATTATAACTACCACATATGAGACAGTATTGAGTCCCCCTGGTGGATTATATCAGGTTAATGCTACTGATGTCAACACTAATAGTAATTCTACGGAATTATATGGTGGGACACCGGTTGTGCCAGAGGCTTTCCGTGCAATATCTGGTATCAATGCGCTTTCCATTCTGGTATCAACTACCACCATCTGGATTCTGACTCCAACAACATCGCTACTAGGCTCTGCACTGATGTTGCCAATTTTGTTTTTGAGCTTCAGCTATATCTTATCTGTGATTACGTCTAAGCTGCTTCTTTTCGAGGATGCCTGA 1197 0.406 MNTTSEDKSRVNLAAQEGDIDGLYTVIQENPHVLEDIDSIPFVDTPLHVAASVGKLEFATEVMTLKPSFALKLNPQGLTPIHLALQNGHERMVLHFVSINKDLVRVKGRKGRTALHLASEKGEIKLLIEFLLACPDCIEDVTVRKETALHIAVRCGQYETLQVLLGWLMKTSHTGALKMERTILNWKDVEGNTVLHLSSRENNFQMVELLVKTAKLNLNAKNYEERSAFDVATNQEIRTVLLRSGANLSATNNVVTYANTFKSKMTLRDKITTSIRRIRCDITENQRNIYLIISTLIITTTYETVLSPPGGLYQVNATDVNTNSNSTELYGGTPVVPEAFRAISGINALSILVSTTTIWILTPTTSLLGSALMLPILFLSFSYILSVITSKLLLFEDA 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1193 398 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 14 385 - -
Aed5g1193 398 Pfam Ankyrin repeats (3 copies) 107 165 IPR002110 GO:0005515
Aed5g1193 398 Coils Coil 206 226 - -
Aed5g1193 398 SMART ANK_2a 76 105 IPR002110 GO:0005515
Aed5g1193 398 SMART ANK_2a 190 220 IPR002110 GO:0005515
Aed5g1193 398 SMART ANK_2a 6 36 IPR002110 GO:0005515
Aed5g1193 398 SMART ANK_2a 144 173 IPR002110 GO:0005515
Aed5g1193 398 SMART ANK_2a 42 71 IPR002110 GO:0005515
Aed5g1193 398 SMART ANK_2a 110 139 IPR002110 GO:0005515
Aed5g1193 398 SUPERFAMILY Ankyrin repeat 13 244 IPR036770 -
Aed5g1193 398 Pfam Domain of unknown function 284 365 IPR026961 -
Aed5g1193 398 Pfam Ankyrin repeat 191 222 IPR002110 GO:0005515
Aed5g1193 398 ProSiteProfiles Ankyrin repeat profile. 110 132 IPR002110 GO:0005515
Aed5g1193 398 Gene3D - 1 267 IPR036770 -
Aed5g1193 398 ProSiteProfiles Ankyrin repeat region circular profile. 190 212 - -
Aed5g1193 398 ProSiteProfiles Ankyrin repeat region circular profile. 110 132 - -
Aed5g1193 398 ProSiteProfiles Ankyrin repeat profile. 190 212 IPR002110 GO:0005515
Aed5g1193 398 PANTHER HOMEOBOX PROTEIN WARIAI 14 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1193 Aed-Chr5 10533878 10537454 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1193 10 330 Miscellaneous Gene Families AT4G10720 43.675 3.73e-93 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1193 - - pvu:PHAVU_011G163400g 369.777