Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1180 ATGGTGCTGCAAAAATGTTACCCTGTGGCTTTTGTGCAATGGGGTTTCTTGGCTTTCTTGCTTTGCTTTTCTGTGGGACTTGAAACCCCAGCCAGATCCTGTGACAAGCATGATCTGTTGGCCCTGAAGGAATTTGCTGGCAACCTTACAAAAGGGTCTATTATCATCACAGAATGGTCAGATGATGCTGTCTGCTGCAAATGGGTTGGTGTTTATTGTGATGATGTTGTTGATGGAGCAGCTGCTGGTAGAGTGTCCAAGTTGATTCTACCTGGAATGGGTCTCAACGGCACGATTTCGAGCTCTTTAGCCTATCTAGATAACCTAAAGGAGCTCAATCTTTCATTCAACCATCTCCAAGGTGAATTGTCTTCTGAGTTCTCTAATTTGAAGCAGTTAAGAGTTCTTGATTTGAGCCATAACATGCTGTCTGGACCGGTTGGTGGGGCAATTTTCGGTTTGCAATCCATTCAAATACTGAATATTTCTAGCAATTTGTTTGTTGGAGACCTCTTCCATTTTGGGGGGTTGCAGCATCTCCTTGCTCTCAACATAAGCAACAATTCATTCACCGGCCAGTTCAATTCTCAAATTTGCAGCTCCTCCAAGGGGTTGTCTAATCTTTTCACATTGGACCTTGGTAGCAATCATTTTAATGGATCCCTTCCAAATTCCTTGTCCTATTGCCATGAATTGACAATGTTAAGCCTTGCTAAAAATGAATTAACTGGCCAAATCCCTGAGAGCTATGCAAACCTCACTTCACTTTTGACTCTGTCTTTGTCAAACAATAGCTTTGAGAACTTATCTGGGGCGCTTTATGTACTGCAGCAGTGCAAGAACCTCACCACTGTTGTCCTCACAAAGAATTTCCACGGTGAGGAAATTCCAGAAAATTTAACAGCAAGCTTCAAGAGCCTTGTGGTGTTAGCACTTGGAAATTGCGGTCTCAAAGGCCGTGTTCCTGCTTGGCTATTGAATTGCCTGAAGTTGGAAGTTCTTGATTTGTCATGGAACCATTTGGAAGGTAGTCTCCCTTCTTGGATTGGTCAGATGGACCATTTGTTCTACTTGGATTTGTCAAATAATTCTCTTACAGGAGAAATACCAAAAGGTTTAACAGAGCTGAGGGGCCTCATATCCCCCAAATATCATATATCAAGTCTCTTTGCATCTGCTGCTATTCCTCTCTATGTCAAGAGAAACAAGAGTGCTAGTGGACTGCAATATAACCATGCCTCAAGTTTCCCTCCTTCAATATACTTGAGCAATAACAGATTAAGTGGAACAATATGGCATGAAATTGGTCGTTTAAAAGAACTTCACATCTTGGATTTAAGCAAGAACAACATCACCGGCACAATTCCTAGCTCTATATCAGAGATGAAGAATTTGGAAACATTAGATTTATCTAATAATAGTCTCGTTGGATCTATTCCTCCATCATTTAACAACCTCACATTCTTGTCTAAGCCTGTAGAAGTCAACGTCGGCCAACGTAGCAGGAATTTAGTCTCTTGGGTGTTGCAGATGAAATCTGAGAATAGGGAGCAGGAAATTTTTGATTCAGTCATTTGGCACAAGGATAATGAAAAGCAGCTCTTAGAGGTACTAGCTATTGCTTGTAAATGTATAGATGAAGATCCAAGGCAGAGACCCTATATTGAATTGGTTGTTTCATGGCTTGATAGTGTAGGATTTGATGCCTCTGAGCATGCATCATCTTAA 1728 0.4132 MVLQKCYPVAFVQWGFLAFLLCFSVGLETPARSCDKHDLLALKEFAGNLTKGSIIITEWSDDAVCCKWVGVYCDDVVDGAAAGRVSKLILPGMGLNGTISSSLAYLDNLKELNLSFNHLQGELSSEFSNLKQLRVLDLSHNMLSGPVGGAIFGLQSIQILNISSNLFVGDLFHFGGLQHLLALNISNNSFTGQFNSQICSSSKGLSNLFTLDLGSNHFNGSLPNSLSYCHELTMLSLAKNELTGQIPESYANLTSLLTLSLSNNSFENLSGALYVLQQCKNLTTVVLTKNFHGEEIPENLTASFKSLVVLALGNCGLKGRVPAWLLNCLKLEVLDLSWNHLEGSLPSWIGQMDHLFYLDLSNNSLTGEIPKGLTELRGLISPKYHISSLFASAAIPLYVKRNKSASGLQYNHASSFPPSIYLSNNRLSGTIWHEIGRLKELHILDLSKNNITGTIPSSISEMKNLETLDLSNNSLVGSIPPSFNNLTFLSKPVEVNVGQRSRNLVSWVLQMKSENREQEIFDSVIWHKDNEKQLLEVLAIACKCIDEDPRQRPYIELVVSWLDSVGFDASEHASS 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1180 575 Gene3D Transferase(Phosphotransferase) domain 1 490 573 - -
Aed5g1180 575 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Aed5g1180 575 SUPERFAMILY L domain-like 62 379 - -
Aed5g1180 575 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 27 379 - -
Aed5g1180 575 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 498 563 - -
Aed5g1180 575 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 177 491 - -
Aed5g1180 575 Gene3D Ribonuclease Inhibitor 420 489 IPR032675 -
Aed5g1180 575 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 498 563 - -
Aed5g1180 575 Gene3D Ribonuclease Inhibitor 196 248 IPR032675 -
Aed5g1180 575 SMART LRR_typ_2 462 485 IPR003591 -
Aed5g1180 575 SMART LRR_typ_2 130 154 IPR003591 -
Aed5g1180 575 SMART LRR_typ_2 438 461 IPR003591 -
Aed5g1180 575 SMART LRR_typ_2 106 129 IPR003591 -
Aed5g1180 575 SMART LRR_typ_2 253 276 IPR003591 -
Aed5g1180 575 SMART LRR_typ_2 352 376 IPR003591 -
Aed5g1180 575 SMART LRR_typ_2 205 229 IPR003591 -
Aed5g1180 575 SMART LRR_sd22_2 438 461 - -
Aed5g1180 575 SMART LRR_sd22_2 352 375 - -
Aed5g1180 575 SMART LRR_sd22_2 130 156 - -
Aed5g1180 575 SMART LRR_sd22_2 462 488 - -
Aed5g1180 575 SMART LRR_sd22_2 253 271 - -
Aed5g1180 575 SMART LRR_sd22_2 106 129 - -
Aed5g1180 575 Gene3D Ribonuclease Inhibitor 36 195 IPR032675 -
Aed5g1180 575 ProSiteProfiles Leucine-rich repeat profile. 464 486 IPR001611 GO:0005515
Aed5g1180 575 PRINTS Leucine-rich repeat signature 462 475 - -
Aed5g1180 575 PRINTS Leucine-rich repeat signature 355 368 - -
Aed5g1180 575 Gene3D Ribonuclease Inhibitor 249 419 IPR032675 -
Aed5g1180 575 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 27 379 - -
Aed5g1180 575 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 177 491 - -
Aed5g1180 575 SUPERFAMILY L domain-like 394 489 - -
Aed5g1180 575 Pfam Leucine rich repeat 306 365 IPR001611 GO:0005515
Aed5g1180 575 Pfam Leucine rich repeat 108 166 IPR001611 GO:0005515
Aed5g1180 575 Pfam Leucine rich repeat 419 475 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1180 Aed-Chr5 10294458 10297622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1180 206 491 Miscellaneous Gene Families AT1G17240 27.333 9.38e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1180 - - gmx:100789534 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1180 5 10294458 10297622 Aed5g1180 5 10294458 10297622 ECH