Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1153 ATGACCGGATCCACCCCACTACATGAGCACTTCAAGAATAGTTTACGTTTTGGTGGAAGTAGTGCTAACCAGAAAACGGATCATGATGTTGTCGAGATTCCTGCACTTGTTACGATTTATCCTCTTAAGTCCCTTAAGCAGAAGAAGCCCTTTCTGCACAATTTCATCAATCTCGACAAGGACGAGCCTGTGGAGTTGATGCTTTTCGGTGAGAAGGTTACAAAAGGGAAAGCGATAAAAAAGACTAATCAAGATATGGAAATGCTTGAGGCTGCTAAGGAAAAAGATAATGGCCATAGTCCTACTTTTGACACTACATTTTCTAACTATAATCCTGATTACTATGATTCCGGAGATTACATGGAGGACATGGAGTACATACTTACCGAAGTTGAGAACCTCATTCCTCCTCTTCCTATGTTTGAAGACTATGTCCCCAATTCTATTCAGACCTACTTATCTCAGCCTCTAGAGCCTACTCTTCAGCATCAGCACTATTCTGGAATACCGGTATCTTTTCCGGCACTACAGCAATACCCAACTCAGTCTTATGGCTATGCAAACAATTATGGGGTCCAGCTACTGCCGTTCGAGGCACCACAATGGGGAGATGTTGGTGCACCAATGATGACATCTCACAATCCATATCCTTCAAACTTTGTTGGATCTTCATATCATCTTCCAGGAGCTGGACCTGTTGTTGATCAGGCGTGGTCAGCGAATACTTATCATGCTCCATATACTTATACACCTTCTATTGTTCATGCTGATCCCGGGATATTGTCTCATAACCCTTCTTCCATTGTTCATGCTGATCCCGCGATATTGTCTCATAACCCTTGGGCTTATAGTTCTGTTGGAGATGCATATACTGGAGCAACTGCTGATAGTATTGTTGCTGCAATATCTGATGAAGCCAGAGAAGAAATTCTCAGGAAATTTCAAAGCTTTAAGCAATTTGACTTTATTGAAGACGCTTCAGACCATGCGTTTGTCAATGACAGCTCTTCCATTCAACTTTTATTTCCTGAACTGCAGCCAGGGTATTGGGCTAAAAGAATCGTGGAAGAGTGGAAGTCATTGGATAAGGATTTACCAGATTCAATATTTGTGAGAGTTTATGAGTCAAGAATCGATCTTATGAGGGCTGTGATTATTGGAGCAGAGGGAACACCTTACCATGATGGCCTTTTCTTCTTTGATGTTTTCTTCCCGAGTAACTATCCCAATGTACCTCCGAATTTCGAGGACTTTGTGGCTGGGTACTTCTGCAGCCGAGCTGATGACATTATGATGGCATGCAAAGCATACATGGAGGGTGCTCAAGTTGGCTGTGTGGTCAAAGGTGGAGTGCAGGACGTTGACCAAGGTGACAAGAGCTGCTCAGACTTCTTCAGGGGATCTGTATCTGAACTTATGCAGATGCTTTCTAAGGAGTTTACTCAGATTGGAGCAAAGGACTGTGACAGACTCTTTCGAATAACCGCGACAGCGGAAGATTCATCTGGTGGAATGCCGGTGGAAGCACCGGGGAATTCGTCCGGTGGAATGCCTGGTGATGATGATGATGATGATATGATTCCTTGA 1587 0.4354 MTGSTPLHEHFKNSLRFGGSSANQKTDHDVVEIPALVTIYPLKSLKQKKPFLHNFINLDKDEPVELMLFGEKVTKGKAIKKTNQDMEMLEAAKEKDNGHSPTFDTTFSNYNPDYYDSGDYMEDMEYILTEVENLIPPLPMFEDYVPNSIQTYLSQPLEPTLQHQHYSGIPVSFPALQQYPTQSYGYANNYGVQLLPFEAPQWGDVGAPMMTSHNPYPSNFVGSSYHLPGAGPVVDQAWSANTYHAPYTYTPSIVHADPGILSHNPSSIVHADPAILSHNPWAYSSVGDAYTGATADSIVAAISDEAREEILRKFQSFKQFDFIEDASDHAFVNDSSSIQLLFPELQPGYWAKRIVEEWKSLDKDLPDSIFVRVYESRIDLMRAVIIGAEGTPYHDGLFFFDVFFPSNYPNVPPNFEDFVAGYFCSRADDIMMACKAYMEGAQVGCVVKGGVQDVDQGDKSCSDFFRGSVSELMQMLSKEFTQIGAKDCDRLFRITATAEDSSGGMPVEAPGNSSGGMPGDDDDDDMIP 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1153 528 Pfam Ubiquitin-conjugating enzyme 353 415 IPR000608 -
Aed5g1153 528 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 46 414 - -
Aed5g1153 528 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 414 493 - -
Aed5g1153 528 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 349 415 IPR000608 -
Aed5g1153 528 MobiDBLite consensus disorder prediction 499 528 - -
Aed5g1153 528 MobiDBLite consensus disorder prediction 1 23 - -
Aed5g1153 528 Gene3D Ubiquitin Conjugating Enzyme 303 415 IPR016135 -
Aed5g1153 528 SUPERFAMILY UBC-like 348 414 IPR016135 -
Aed5g1153 528 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 46 414 - -
Aed5g1153 528 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 414 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1153 Aed-Chr5 9913663 9918187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1153 312 413 Miscellaneous Gene Families AT2G33770 48.039 3.85e-26 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1153 K10581 - gmx:100800819 249.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1153 5 9913663 9918187 Aed5g1153 5 9913663 9918187 ECH