Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1136 ATGCCGTTGGCGCGGTTGTTATTCTCCACATCGTCTCGGAACCTCGCCGCCGCAGCAGCAGCATTTCTGCGCCACTGCTCCACCACCGCCGCCGCCACGACAACGAACCGCAGAAGCCTCTATTCCCGAATCAGCCCCCTCGGAGACCCTTCAATCAGCGTGACTCCCGTTCTCGACGAGTGGATCGAAGAGGGCAATTCCGTTAGCGGGCTCCACCTCCTACACGTCGTCAAAACCCTGCGTACATGCAAGCGCCTCACCCAAGCACTCGAGGTTTCCGAGTGGATGAGTAGCAAAGGGCTATGCCCAATTTCCTCGCGTGACAAAGCAGTGCAGCTAGATCTCATTGGTAGAGTTCGTGGAGTGGAGAGTGCAGAGAGGTATTTTCAGAATTTGAGTGATGGAGACAAAACTTGGAAGGTTCATGGTGCTCTCTTGAATTGTTACGTGAGAGAAGGGTTGGTTGATGAGTCACTCTCCCAGATGCAGAAGATGAAGGACATGGGTTTTGTTAACTGTCTCAACTACAACAACCTAATGACCCTCTACCTGCAAACCCAACAACATGAGAAAGTTCCCGGTGTTCTGGCGCAGATGAAGAAGGACAATGTTCCTCCGAACATCTTCAGCTACAGGATATGCATAAGCTCTTTTGGTGCGAGAGGTGACCTCGCGAATGTGGAGAAATTGCTGGAGGAGATGGAGAGGGAACCCCATATTGGAACAGATTGGATTACATATTCTATGGTGACCAAGTTCTACATAAAAGCAGACATGAAGGAGAAGGCTCTGGTGTGCCTGAGAAAGTGCGAGGAAAAGGCACACAAGGGCAACGCGCTTGCCTACAACTATCTGATATCACATTATGCAGCTCTTGGTGCATTGGGGGGCATGAGGAGAGTTTGGAAGATCCAGAAGGCCAACTGCAAGAAGCAGCTTAACAGGGAGTATATAACAATGTTGGGTTGTTTGATGAAGATGGGGGAGCTTGATGAAGCTGAAAAAGTACTTGGTGAGTGGAAATTATCTGCTAACACTTATGATTTCAGAGTTCCCAACATCCTCTTGATCGGGTATTCCCAAAGTGGATTGGTTGAGAAGGCAGAAGCGCTGCTCCAGAAAATGGTTGCGGAAGGGAAGACACCAACTCCTAACAGTTGGAGCATCATTGCATCTGGGTATGTGGCCAAGGAAAACATGGAGAAGGCATTTGAGTGCATGAAGGAAGCTGTGGCTGTGCATGCACAGAATAAACATTGGAGGCCAAAAGCTGATGTCCTTTCAAGCATATTCAGTTGGGTCACTGATAACAGAGATATAGGGGAAATTGAAGATTTTGTCAATTCATTGAAGACTGTGAATTCAATGAATAGGGACATGTATCTGTCCTTGATCAAGATGTATGTTAGATGTGGGAAAGATGTAGATGGGATTTTAGAGAGTATGAAAGCTGATAATATAGAGATCGATGATGAGATAAAGGAAACTCTTAGCTCATAA 1500 0.4733 MPLARLLFSTSSRNLAAAAAAFLRHCSTTAAATTTNRRSLYSRISPLGDPSISVTPVLDEWIEEGNSVSGLHLLHVVKTLRTCKRLTQALEVSEWMSSKGLCPISSRDKAVQLDLIGRVRGVESAERYFQNLSDGDKTWKVHGALLNCYVREGLVDESLSQMQKMKDMGFVNCLNYNNLMTLYLQTQQHEKVPGVLAQMKKDNVPPNIFSYRICISSFGARGDLANVEKLLEEMEREPHIGTDWITYSMVTKFYIKADMKEKALVCLRKCEEKAHKGNALAYNYLISHYAALGALGGMRRVWKIQKANCKKQLNREYITMLGCLMKMGELDEAEKVLGEWKLSANTYDFRVPNILLIGYSQSGLVEKAEALLQKMVAEGKTPTPNSWSIIASGYVAKENMEKAFECMKEAVAVHAQNKHWRPKADVLSSIFSWVTDNRDIGEIEDFVNSLKTVNSMNRDMYLSLIKMYVRCGKDVDGILESMKADNIEIDDEIKETLSS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1136 499 Gene3D Tetratricopeptide repeat domain 194 315 IPR011990 GO:0005515
Aed5g1136 499 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 24 498 - -
Aed5g1136 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Aed5g1136 499 SUPERFAMILY TPR-like 321 418 IPR011990 GO:0005515
Aed5g1136 499 TIGRFAM PPR: pentatricopeptide repeat domain 353 383 IPR002885 -
Aed5g1136 499 Pfam PPR repeat family 175 218 IPR002885 -
Aed5g1136 499 Gene3D Tetratricopeptide repeat domain 49 183 IPR011990 GO:0005515
Aed5g1136 499 SUPERFAMILY TPR-like 148 411 IPR011990 GO:0005515
Aed5g1136 499 Gene3D Tetratricopeptide repeat domain 316 445 IPR011990 GO:0005515
Aed5g1136 499 PANTHER OS12G0527900 PROTEIN 24 498 - -
Aed5g1136 499 Pfam PPR repeat 353 379 IPR002885 -
Aed5g1136 499 Pfam PPR repeat 317 341 IPR002885 -
Aed5g1136 499 Pfam PPR repeat 386 409 IPR002885 -
Aed5g1136 499 Pfam PPR repeat 144 170 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1136 Aed-Chr5 9663906 9666587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1136 39 490 EF-hand Containing Proteins AT1G02150 33.921 2.18e-86 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1136 - - gmx:100804385 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1136 5 9663906 9666587 Aed5g1136 5 9663906 9666587 ECH