Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1129 ATGACCCAAGCCGTGGACCACGAACAAGACGACACCACCGACTCTTGCTTTTTCCACGACTCCAACGACCGCTTACTCTCTTCCTCTTCCTGCTCCTGCTCCACCTCCACCTCCGACAACGACGAGACTCCCACTCCCCAAAACGACACCATCGCCCCCAAAAACGAAGCCTCCCTCAATGCCCTTCCCCAATTCCCTTTCCCCACCATGTGCAAGTTCGAAGCTTGGATCTCCGAACCCTCCTCCCTCTCCGAACGCCGCTCCCGCCTCCTCCGCCAGTTCGGCCTCCCCGCTCCGCTCCCCTCCTCTTCCTCCGCCGCAATCCCCCGATCAGCCTCCTCTCACCATTGCACCGACACTTCCTCCACTGTCACCGTCGCCGCCGCCACAATTCCCCGATCGAAATCCGACAACACCGCGGATCGCGCCACCAAGCATTGCAAGTCCTCGGTTGTTCCCATCCACGACGATGACGACACTTTTCTCGTGAATAATACTAGTAGTACTATTAGTCATAATAATCATGCTCGTGCTGGTGGTGCTGCTTCTGTTTCTGTGAATAATAATAATATTAATAATAATAATAATAATAATAGGTTTTGTGTGAGTGTGTATGAGGATGATGATGGTGGAGTTGGGGAGGGTAATGTTGATTTCAGTAATGTGGTGGATGAAGCTGAACAAGCGTGTACGATTAGGGATTTGGATAATGGGAAGGAGTTTGTGGTGAAGGAGGATGGGGTGTTGAATGAGGTGAAGGAGGTCGGGACTGGGAGGCGTTTGACCGTCGAGGAGTTTGAGATGACAGTGGGGCATTCGCCCATTGTTCAGGAACTCATGAGGAGGCAGAATGTGGAGGGAGCTGGTAATGGGGAGGGTGTGGATTTGAGTGTGGATGGTGGTGGTGATGATGAGGGGGATGATGGGGGCAAGGTGAAGAGGAAAGGGGGGTGGTTTAAGTTTATGAGCTTGAAGAGTGTTGTGGTGGGGCAGAAGGAGAGGCGGACTGGGGATGAGAGGGATACGTCGTCCTCGGAGAAGGGGGGTGGCCGGAGGTCGAGTTCGGCCACAGATGATAGCCAGGATGGTTGTGGGTTGGTTCATGGGGGTGAGAGAGTGAGGGTGAGGCAGTATGGGAAGTCGTTTAAGGAGGTTACGAGGCTTTTTAGGAGCCAGGAGTTTCAGGCTCACGAGGGATCCATTTGGACCATTAAGTTTAGTTTGGATGGGAGGTATCTTGCTAGTGCAGGGGAGGATCACGTGATCCATGTTTGGCAGGTCGTGGTGTCCGAGAGGAAGGGCGAGTTGCTGGTGGAGAAACCGGAAGATGGGAATTTGAACATGTTGTTTCTTGTGAATGGGTCGCCAGAGCCTTTGTCTCCTGGCATGGATAGTAGTTTGGAGAAGAAGAGAAGGGGGAGGTTGTCTGTTAGCAGAAAATCATTGAGCTTGGACCAGTTGGTTTTGCCGGAAACTGTGTTTGCGCTCACTGAAAAACCCGTTTGCTCCTTTAAGGGCCATCTCCATGATGTGCTTGACCTTTCTTGGTCCAAGTCTCAGCAATTGCTCTCATCTTCGATGGACAAAACAGTGCGACTGTGGCATTTGTCTAGCAAGTCTTGTCTGCAAATTTTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAAATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGTATATGGAGCATTCCTGATCGACAAGTTGTAGATTGGACTGATCTACATGAGATGGTCACTGCTGCTTGTTATACGCCTGATGGTCAGGGTGCTCTAGTTGGTACATACAAGGGTAGCTGCCATTTATATAATACATCTGAAAATAAGTTGCAGCAGAAAAGTCAGATAAATTTGCAGAACAGAAAAAGGAGATCGAACCACAAGAAAATTACTGGCTTCCAGTTTGTGCCAGGAAGTTCATCAGAAGTACTCATCACTTCTTCTGATTCTCGGATTCGACTTGTTGATGGTATTGATTTAGTTCATAAATTTAAAGGTTTTCGCAATGCAAATAGCCAAATTTCTGCCTGCCTCACAGATAATGGTAAACATGTTGTCTCAGCAAGTGAGGATTCTCATGTATACATTTGGAAAAATGAAGCTGATTGCAGACCTAGCAGGAGTAAAGGTGTCACTGTGACTAGCACATATGAACATTTTCACTGTAAAGATGTGTCAGTGGCCATTCCTTGGCCAGGTATGGATGATGCATGGGAAATGCATGATCCATATTTTGCAGAAGAACCCGAGCTTGATGATAATGAGGATGAGGATGAGGTCTTGTCGGCCAATCATCCTCCTACTCCAGTAGAGGAAAATTTTGGTTCTGAGGGTTCACAATTTGCTTCAGGTTGCAATAACAGTCCACTTCATGGAACCATTGCAAGTGCAACAGATAGTTATTTTCTTGATAGAATTTCTGCGACATGGCCTGAGGAAAAACTTCTCACTACAAGGGACCGAAGCCCCCGGGTAAGTGTGGATTTGTCTAATGGGGTGAACCAAAACATGGCAGCCTGGGGTATGGTGATTGTAACTGCCGGCCTTCAAGGGGAAATTAAAGTTTTTCAAAATTTTGGATTGCCACTTGGTATATAA 2640 0.4788 MTQAVDHEQDDTTDSCFFHDSNDRLLSSSSCSCSTSTSDNDETPTPQNDTIAPKNEASLNALPQFPFPTMCKFEAWISEPSSLSERRSRLLRQFGLPAPLPSSSSAAIPRSASSHHCTDTSSTVTVAAATIPRSKSDNTADRATKHCKSSVVPIHDDDDTFLVNNTSSTISHNNHARAGGAASVSVNNNNINNNNNNNRFCVSVYEDDDGGVGEGNVDFSNVVDEAEQACTIRDLDNGKEFVVKEDGVLNEVKEVGTGRRLTVEEFEMTVGHSPIVQELMRRQNVEGAGNGEGVDLSVDGGGDDEGDDGGKVKRKGGWFKFMSLKSVVVGQKERRTGDERDTSSSEKGGGRRSSSATDDSQDGCGLVHGGERVRVRQYGKSFKEVTRLFRSQEFQAHEGSIWTIKFSLDGRYLASAGEDHVIHVWQVVVSERKGELLVEKPEDGNLNMLFLVNGSPEPLSPGMDSSLEKKRRGRLSVSRKSLSLDQLVLPETVFALTEKPVCSFKGHLHDVLDLSWSKSQQLLSSSMDKTVRLWHLSSKSCLQIFSHSDYVTCIQFNPVDDKYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALVGTYKGSCHLYNTSENKLQQKSQINLQNRKRRSNHKKITGFQFVPGSSSEVLITSSDSRIRLVDGIDLVHKFKGFRNANSQISACLTDNGKHVVSASEDSHVYIWKNEADCRPSRSKGVTVTSTYEHFHCKDVSVAIPWPGMDDAWEMHDPYFAEEPELDDNEDEDEVLSANHPPTPVEENFGSEGSQFASGCNNSPLHGTIASATDSYFLDRISATWPEEKLLTTRDRSPRVSVDLSNGVNQNMAAWGMVIVTAGLQGEIKVFQNFGLPLGI 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1129 879 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 544 578 - -
Aed5g1129 879 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 427 IPR001680 GO:0005515
Aed5g1129 879 MobiDBLite consensus disorder prediction 330 368 - -
Aed5g1129 879 Pfam WD domain, G-beta repeat 674 712 IPR001680 GO:0005515
Aed5g1129 879 Pfam WD domain, G-beta repeat 499 534 IPR001680 GO:0005515
Aed5g1129 879 Pfam WD domain, G-beta repeat 392 425 IPR001680 GO:0005515
Aed5g1129 879 Pfam WD domain, G-beta repeat 540 577 IPR001680 GO:0005515
Aed5g1129 879 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 578 IPR001680 GO:0005515
Aed5g1129 879 MobiDBLite consensus disorder prediction 287 311 - -
Aed5g1129 879 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 504 538 - -
Aed5g1129 879 MobiDBLite consensus disorder prediction 331 347 - -
Aed5g1129 879 Gene3D - 378 735 IPR015943 GO:0005515
Aed5g1129 879 ProSiteProfiles Trp-Asp (WD) repeats profile. 504 544 IPR001680 GO:0005515
Aed5g1129 879 PRINTS G protein beta WD-40 repeat signature 413 427 IPR020472 -
Aed5g1129 879 PRINTS G protein beta WD-40 repeat signature 522 536 IPR020472 -
Aed5g1129 879 PRINTS G protein beta WD-40 repeat signature 564 578 IPR020472 -
Aed5g1129 879 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 2 878 - -
Aed5g1129 879 SUPERFAMILY WD40 repeat-like 390 712 IPR036322 GO:0005515
Aed5g1129 879 MobiDBLite consensus disorder prediction 33 54 - -
Aed5g1129 879 SMART WD40_4 387 426 IPR001680 GO:0005515
Aed5g1129 879 SMART WD40_4 631 670 IPR001680 GO:0005515
Aed5g1129 879 SMART WD40_4 580 618 IPR001680 GO:0005515
Aed5g1129 879 SMART WD40_4 497 535 IPR001680 GO:0005515
Aed5g1129 879 SMART WD40_4 538 577 IPR001680 GO:0005515
Aed5g1129 879 SMART WD40_4 671 712 IPR001680 GO:0005515
Aed5g1129 879 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 394 427 - -
Aed5g1129 879 MobiDBLite consensus disorder prediction 98 122 - -
Aed5g1129 879 PANTHER WD REPEAT DOMAIN 44 2 878 IPR040324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1129 Aed-Chr5 9598896 9605514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1129 501 712 Miscellaneous Gene Families AT5G08390 22.523 1.56e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1129 K20241 - gmx:100806518 1434.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1129 5 9598896 9605514 Aed5g1129 5 9598896 9605514 ECH