Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1125 ATGCATCGTGCCATGTCGATGAGCATTCAATCCAGGTTTCTGAGCCAACAAATAATAACAAAGGTGAATCAAGTGATGGGAAATCAGGTTGTCATGGATCCCTTTGATGTGTTCATAAGCCACAAAAGTTTGGACACAAAAGCAACACTTGCCACTCCTCTTTATGACCATCTCCGCAGATTACGCTTTCACCCTTTTTTGGATAACAAGACTTTGAAGCCAGGTGACAAACTGTTTGATAAAATAAACAGAGCAATCTTGGAGTGCAAGATTGGTTTGGCTGTGATGTCACCACGCTATTGTGACTCATACTTTTGCCTTCATGAACTTGCTCTTCTCATGGAGTTCAAGAAGAAGGTCATACCCATCTTCGTTGACATTAAGCCATCTCAATTACGCGTCACCAGCAACAAAAAATGGACTGTCGAAGATCAACGACGATTCAAATTAGCTATTGAAGAAGTAAAATACACCGTGGGACTCACATTCAACTCTTCACAAGGGAACTTCTCTGGTATTGTGACAAGTGCTTCTGATATAATCATTGAGAGCTTGATAGAGCTTGAGAATGAAGAGGCCCAGATCCAGCATTCATACTACTTGCCAATTAGCTAA 615 0.4114 MHRAMSMSIQSRFLSQQIITKVNQVMGNQVVMDPFDVFISHKSLDTKATLATPLYDHLRRLRFHPFLDNKTLKPGDKLFDKINRAILECKIGLAVMSPRYCDSYFCLHELALLMEFKKKVIPIFVDIKPSQLRVTSNKKWTVEDQRRFKLAIEEVKYTVGLTFNSSQGNFSGIVTSASDIIIESLIELENEEAQIQHSYYLPIS 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1125 204 Pfam TIR domain 35 133 IPR000157 GO:0007165
Aed5g1125 204 Gene3D - 6 156 IPR035897 -
Aed5g1125 204 SUPERFAMILY Toll/Interleukin receptor TIR domain 35 144 IPR035897 -
Aed5g1125 204 PANTHER COP-1 INTERACTING PROTEIN 1 204 - -
Aed5g1125 204 ProSiteProfiles TIR domain profile. 33 159 IPR000157 GO:0007165
Aed5g1125 204 PANTHER COP1-INTERACTING PROTEIN-RELATED 1 204 - -
Aed5g1125 204 SMART till_3 34 162 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1125 Aed-Chr5 9561703 9563441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1125 37 194 Miscellaneous Gene Families AT1G57670 26.437 2.64e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1125 - - gmx:100526930 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1125 5 9561703 9563441 Aed5g1125 5 9561703 9563441 ECH