Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1050 ATGAGGACTAGTGTTTTTTCTATTATTCATTTCCTCATAGTAACTCATCTCCTTGTGAGGGCAGAATCAATTGGCAGAGAAGATTTTCCAGAGGGCTTCATCTTTGGAACTGCTTCTTCAGCTCACCAGTTTGAGGGAGCTTCTGATGAAGGCAACAAAGGAGATAGTATTTGGGATACTTTCTCAAGGTTACCAGGGAGAATTTTGGACTTCAGCAATGCAGACAAGGCTGTGGATCAATACCACCGATTTCAGAATGATATAAACTTGATGAAGGATTTGGGAATGGATTCTTACAGATTTTCCATATCATGGCCGAGAATTTTCCCAAATGGAACAGGGGAACCCAATAAAGAGGGAATAAAATATTACAATAGCCTCATTGATGCTTTGCTTGAAAAAGGAATCCAGCCTTTTGTAACACTATATCATTGGGATCTTCCACAGATGCTAGAAGATAAATATGAAGGATGGTTAAGCTCACAAGTCATAAAAGATTATGAGTACTATGCCTATACATGCTTCAAAGCTTTTGGAGACAGAGTTAAGCACTGGATTACCTTCAATGAGCCTCATAACTTTGCACTCCATGGCTATGATTTAGGCATTCAAGCACCAGGAAGATGTTCCCTTTTAGGTCATGTTCTGTGTAAGAAGGGAAAATCATCCACTGAGCCATACATTGTTGCTCACAACATTCTCTTGTCACATGCTGCTGCCTATAGAAGCTACCAACTACATTTCAAGGAACAACAAGGAGGTCAAATAGGAATAGCACTAGATGTCATTTGGTATGAACCAATAACAGAACTTGATGAAGACAAAGATGCAGCAGCAAGAGCTATGGACTTTTCACTTGGATGGTTCCTTGACCCTCTTTTCTTTGGAAAATACCCTCTCTCAATGAAGAAACTTGTAGCTCATAGATTGCCTGAGATTTCTTATGCAACCTCAGAATTTCTTGTGGGATCTTTGGATTTTATTGGCATCAATCACTACACCTCGGTGTATACTCGAAACGACAGGATTCGGATTCGCAAACTGGTTATGCAAGATGCTGTTACTGATGCTGCTGTCATTACAACTGCATACCGAAGAGGATCTGCAATTGGAGAAAAGGCAGCTTCAAGTTGGCTACACATTGTTCCATGGGGCATCCGAAAGTTAGTAAAACACGTGAAAGACAAATATGGGGACACGCCAGATGACAAGAGGATAAGATACCATAGAGACTATCTCTCAAACCTATCTGCTGCAATAAGGGAAGATGATTGCAATGTGCGTGGTTACTTTGTATGGTCATTGCTTGACAATTGGGAGTGGAACATGGGATACACCGTACGCTTTGGACTCTATTATGTTGATTTCAGGAGCAATCTTACTAGGATACCAAAAGATTCAGTGCAATGGTTCAAAAACTTGCTCAGAATAAAGACAGAGCAGAGTAGTGATATTTGA 1458 0.404 MRTSVFSIIHFLIVTHLLVRAESIGREDFPEGFIFGTASSAHQFEGASDEGNKGDSIWDTFSRLPGRILDFSNADKAVDQYHRFQNDINLMKDLGMDSYRFSISWPRIFPNGTGEPNKEGIKYYNSLIDALLEKGIQPFVTLYHWDLPQMLEDKYEGWLSSQVIKDYEYYAYTCFKAFGDRVKHWITFNEPHNFALHGYDLGIQAPGRCSLLGHVLCKKGKSSTEPYIVAHNILLSHAAAYRSYQLHFKEQQGGQIGIALDVIWYEPITELDEDKDAAARAMDFSLGWFLDPLFFGKYPLSMKKLVAHRLPEISYATSEFLVGSLDFIGINHYTSVYTRNDRIRIRKLVMQDAVTDAAVITTAYRRGSAIGEKAASSWLHIVPWGIRKLVKHVKDKYGDTPDDKRIRYHRDYLSNLSAAIREDDCNVRGYFVWSLLDNWEWNMGYTVRFGLYYVDFRSNLTRIPKDSVQWFKNLLRIKTEQSSDI 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1050 485 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 33 47 IPR033132 -
Aed5g1050 485 SUPERFAMILY (Trans)glycosidases 17 475 IPR017853 -
Aed5g1050 485 Gene3D Glycosidases 15 477 - -
Aed5g1050 485 PRINTS Glycosyl hydrolase family 1 signature 448 460 IPR001360 GO:0004553|GO:0005975
Aed5g1050 485 PRINTS Glycosyl hydrolase family 1 signature 424 441 IPR001360 GO:0004553|GO:0005975
Aed5g1050 485 PRINTS Glycosyl hydrolase family 1 signature 402 413 IPR001360 GO:0004553|GO:0005975
Aed5g1050 485 PRINTS Glycosyl hydrolase family 1 signature 324 338 IPR001360 GO:0004553|GO:0005975
Aed5g1050 485 PANTHER BETA-GLUCOSIDASE 41-RELATED 14 476 - -
Aed5g1050 485 Pfam Glycosyl hydrolase family 1 27 477 IPR001360 GO:0004553|GO:0005975
Aed5g1050 485 PANTHER GLYCOSYL HYDROLASE 14 476 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1050 Aed-Chr5 8382316 8388761 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1050 19 421 Glycoside Hydrolase AT5G54570 68.852 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1050 K01188 - gmx:100783543 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1050 5 8382316 8388761 Aed5g1050 5 8382316 8388761 ECH