Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0924 ATGAGTTGCCAACATGGCCAACTACTCCTCAATTTACTCCAAGCATGTTCCACCATTCGGTACCTCAATACCACCAAATGTCTCCATGCACTCACCATCACAATGGGTCACATTCCAAAGCAATCTATTTTCATCCACAACAACATCATCTCCTCTTACAGTGCCCTGGGTGAACTGCTCCATGCACGCAAGGTGTTCGACGCTTTGCCCCGCAGAACAGTTGTCTCTTACAACACTCTTATCACTGCTTATTGTCGAGGCGGGGATGTAGACGATGCTTGGAACTTGCTCTGCCACATGAGGGGGAGTGGTTTTGCGCCTACCCAATACACGCTCACCGGGTTGCTGTCGTGTGAGTTGTTGAACCTTTCTCAGGGTGTTCAGCTCCACGCTTTGAGCATTAGGAATGGACTCTTAGATGCTGATGCTTTTGTGGGTACTGCTTTGTTGGGCTTGTTGGGGAGACATGGATGTTGGGATGAACTGTTTTTGGCGTTCGAAGAAATGCCCCTGAAGAGCTTGGTGACATGGAACTCCATGGTGTCCTTGCTGGCACGTAATGGTTTTGTTGAAGAGTGTAAGGTTTTGTTTTGTGATCTTGTGGGGACGGGGATGTCTTTGTCGGAAGGTTCTTTTGTTGCTGTTTTGTCCGGACTTGTTGATTCTGAGGAGGATTTAGAATATGGTGAACAGGTTCATAGCTTAATGGTTAAATGTGGGATTGGTTGTGAAATTGCTGCGGTTAATTCTCTCATCAGTGTGTATGTCAGGTGCAAAGCTATGTTTGCGGTGGAAAGATTGTTTGAGCAGGTTCCTGTTCAGAATGTTGTGTCCTGGAATACAGTCATTGATGCATTGGTAAAAAGTGAGAGACCTATGATGGCTCTGGAGCTGTTTTTGAATATGGCAAGGAGCGGATTGATGCCAAGTCAAGCCACGTTTGTTGCTGTTATTGACTCATGTACTAGTTTGAGAAACTTGGTATGTGGAGAATCTGTCCATGCTAATGTAATTGGGAGTGGTTTTGAATCTGATGTTATTGTGGGTACTGCATTGGTAGACTTCTACGCCAAATGTGATAAATTTATTTCAGCTCATAAATGTTTTGATCAGATAGAAGAGAAGAATTTGGTTTCTTGGAATGCTTTGATACTGGGTTACTCAAACATTTGCCCTTCCACATCGATTCTATTGTTACAAGAAATGTTCCAATTGGGTTACTCCCCTAATGAGTTTTCCTTTTCTACTGTTCTCAAGTCATCTTCAATGTCAAACCTTCATCAGCTCCATGGCTTGATTATAAAATCAGGGTATGAGAGTAATGAATACGTATTAAGCTCTCTTGTTATGGCTTACACCAGAAATGGTCTCATAAATGAAGCACTTTCGTTTGTCAAAGAATTCAATAACCCACTTCCTGCAGTCCCATCTAACATCATTGCTGGAATCTATAACAGAACTTGCCGGTACCATGAAACAGTAAAGCTGCTTTCTTTGCTAGAAAAACCTGATGTTGTATCCTGGAACATTGTCATTTCAGCTTGCGCTCGGAGCAATAATCATGACGAGGTTTTTGTGCTTTTCAAGCATATGCATTCTGCATGCATCCATCCAGATAGTTACACATTTATCAGTGTATTGTCTGTGTGCACCAAACTTTGCCTTCTGGATTTGGGCAGTTCTCTTCATGGACTGATTATAAAGACTAATCCTGGTAACTATGACACATTTTTGGGCAATGTACTAATTGACATGTATGGGAAGTGTGGAAGCATTGACAGTTCAGTGAAAGTTTTTGAAGAAATTAAGAACAAAAATATTATTACATGGACAGCTTTAATTACTGCCCTTGGGCTGAACGGTTATGCTTATGAGGCAGTGATGAGATTCCAAAACATGGAATTGATGGGGTTGAAGCCTGATGCATTAGCACTCAGAGCAGTGCTTTCTTCTTGCAGATATGGTGGATTAGTAAACAAAGGCATGGAAATTTTCAGCCAAATGGGAACCAGGTATGGGATTCCACCAGAACATGATCATTACCATTGCTTGGTAGACCTCCTGGCTAAAAATGGACAAATCAAGGAAGCTGAAAAAATCATTGCAAGCATGCCTTTCCCACCAAAGGCAAATGTATGGCGTAGCTTCCTTGAAGGCTACAGTAGGCAAGAAATTGCAAATTGA 2184 0.4222 MSCQHGQLLLNLLQACSTIRYLNTTKCLHALTITMGHIPKQSIFIHNNIISSYSALGELLHARKVFDALPRRTVVSYNTLITAYCRGGDVDDAWNLLCHMRGSGFAPTQYTLTGLLSCELLNLSQGVQLHALSIRNGLLDADAFVGTALLGLLGRHGCWDELFLAFEEMPLKSLVTWNSMVSLLARNGFVEECKVLFCDLVGTGMSLSEGSFVAVLSGLVDSEEDLEYGEQVHSLMVKCGIGCEIAAVNSLISVYVRCKAMFAVERLFEQVPVQNVVSWNTVIDALVKSERPMMALELFLNMARSGLMPSQATFVAVIDSCTSLRNLVCGESVHANVIGSGFESDVIVGTALVDFYAKCDKFISAHKCFDQIEEKNLVSWNALILGYSNICPSTSILLLQEMFQLGYSPNEFSFSTVLKSSSMSNLHQLHGLIIKSGYESNEYVLSSLVMAYTRNGLINEALSFVKEFNNPLPAVPSNIIAGIYNRTCRYHETVKLLSLLEKPDVVSWNIVISACARSNNHDEVFVLFKHMHSACIHPDSYTFISVLSVCTKLCLLDLGSSLHGLIIKTNPGNYDTFLGNVLIDMYGKCGSIDSSVKVFEEIKNKNIITWTALITALGLNGYAYEAVMRFQNMELMGLKPDALALRAVLSSCRYGGLVNKGMEIFSQMGTRYGIPPEHDHYHCLVDLLAKNGQIKEAEKIIASMPFPPKANVWRSFLEGYSRQEIAN 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0924 727 Gene3D Tetratricopeptide repeat domain 121 222 IPR011990 GO:0005515
Aed5g0924 727 Gene3D Tetratricopeptide repeat domain 333 423 IPR011990 GO:0005515
Aed5g0924 727 Gene3D Tetratricopeptide repeat domain 7 120 IPR011990 GO:0005515
Aed5g0924 727 Gene3D Tetratricopeptide repeat domain 557 651 IPR011990 GO:0005515
Aed5g0924 727 Pfam PPR repeat 175 201 IPR002885 -
Aed5g0924 727 Pfam PPR repeat 580 607 IPR002885 -
Aed5g0924 727 Pfam PPR repeat 350 376 IPR002885 -
Aed5g0924 727 Pfam PPR repeat 46 71 IPR002885 -
Aed5g0924 727 Pfam PPR repeat 446 467 IPR002885 -
Aed5g0924 727 Pfam PPR repeat 608 637 IPR002885 -
Aed5g0924 727 Pfam PPR repeat 680 704 IPR002885 -
Aed5g0924 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Aed5g0924 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 504 538 IPR002885 -
Aed5g0924 727 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 70 725 - -
Aed5g0924 727 Gene3D Tetratricopeptide repeat domain 424 556 IPR011990 GO:0005515
Aed5g0924 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Aed5g0924 727 Gene3D Tetratricopeptide repeat domain 652 726 IPR011990 GO:0005515
Aed5g0924 727 Gene3D Tetratricopeptide repeat domain 223 332 IPR011990 GO:0005515
Aed5g0924 727 TIGRFAM PPR: pentatricopeptide repeat domain 175 208 IPR002885 -
Aed5g0924 727 TIGRFAM PPR: pentatricopeptide repeat domain 608 642 IPR002885 -
Aed5g0924 727 TIGRFAM PPR: pentatricopeptide repeat domain 277 310 IPR002885 -
Aed5g0924 727 TIGRFAM PPR: pentatricopeptide repeat domain 75 108 IPR002885 -
Aed5g0924 727 TIGRFAM PPR: pentatricopeptide repeat domain 506 539 IPR002885 -
Aed5g0924 727 Pfam PPR repeat family 503 550 IPR002885 -
Aed5g0924 727 Pfam PPR repeat family 73 117 IPR002885 -
Aed5g0924 727 Pfam PPR repeat family 275 321 IPR002885 -
Aed5g0924 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 73 107 IPR002885 -
Aed5g0924 727 PANTHER OS01G0754700 PROTEIN 70 725 - -
Aed5g0924 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 606 640 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0924 Aed-Chr5 7050997 7053180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0924 467 722 Glycoside Hydrolase AT3G49170 26.866 1.93e-18 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0924 - - gmx:100781755 1315.44